Refactor a test for portability and reproducibility.

VJalili · VJalili · commit 1fb64b71a02c · 2022-11-14T19:28:06.000-05:00
diff --git a/CLI.Tests/Main.cs b/CLI.Tests/Main.cs
@@ -262,26 +262,57 @@ public void CorrectAndSuccessfulAnalysis()
 
             // Assert
             Assert.Contains("All processes successfully finished", output);
+            string[] columns;
             using (var reader = new StreamReader(Directory.GetFiles(outputPath, "*ConsensusPeaks.bed")[0]))
             {
                 Assert.Equal("chr\tstart\tstop\tname\t-1xlog10(p-value)\tstrand", reader.ReadLine());
-                Assert.Equal("chr1\t4\t20\tMSPC_Peak_1\t25.219\t.", reader.ReadLine());
-                Assert.Equal("chr2\t25\t45\tMSPC_Peak_2\t12.97\t.", reader.ReadLine());
+
+                columns = reader.ReadLine().Split('\t');
+                Assert.True(
+                    columns[0] == "chr1" && 
+                    columns[1] == "4" && 
+                    columns[2] == "20" && 
+                    columns[3].StartsWith("MSPC_Peak_") && 
+                    columns[4] == "25.219" && 
+                    columns[5] == ".");
+
+                columns = reader.ReadLine().Split('\t');
+                Assert.True(
+                    columns[0] == "chr2" &&
+                    columns[1] == "25" &&
+                    columns[2] == "45" &&
+                    columns[3].StartsWith("MSPC_Peak_") &&
+                    columns[4] == "12.97" &&
+                    columns[5] == ".");
                 Assert.Null(reader.ReadLine());
             }
 
             var dirs = Directory.GetDirectories(outputPath);
             Assert.True(dirs.Length == 2);
 
             Assert.True(Directory.GetFiles(dirs[0]).Length == 14);
-            string line;
             using (var reader = new StreamReader(Directory.GetFiles(dirs[0], "*TruePositive.bed")[0]))
             {
                 Assert.Equal("chr\tstart\tstop\tname\t-1xlog10(p-value)\tstrand", reader.ReadLine());
-                line = reader.ReadLine();
-                Assert.True("chr1\t10\t20\tmspc_peak_1\t7.12\t." == line || "chr1\t4\t12\tmspc_peak_3\t19.9\t." == line);
-                line = reader.ReadLine();
-                Assert.True("chr2\t25\t35\tmspc_peak_2\t5.507\t." == line || "chr2\t30\t45\tmspc_peak_4\t9\t." == line);
+
+                columns = reader.ReadLine().Split('\t');
+                Assert.True(
+                    columns[0] == "chr1" &&
+                    (columns[1] == "10" || columns[1] == "4") &&
+                    (columns[2] == "20" || columns[2] == "12") &&
+                    columns[3].ToLower().StartsWith("mspc_peak_") &&
+                    (columns[4] == "7.12" || columns[4] == "19.9") &&
+                    columns[5] == ".");
+
+                columns = reader.ReadLine().Split('\t');
+                Assert.True(
+                    columns[0] == "chr2" &&
+                    (columns[1] == "25" || columns[1] == "30") &&
+                    (columns[2] == "35" || columns[2] == "45") &&
+                    columns[3].ToLower().StartsWith("mspc_peak_") &&
+                    (columns[4] == "5.507" || columns[4] == "9") &&
+                    columns[5] == ".");
+
                 Assert.Null(reader.ReadLine());
             }
 
@@ -290,10 +321,25 @@ public void CorrectAndSuccessfulAnalysis()
             using (var reader = new StreamReader(Directory.GetFiles(dirs[1], "*TruePositive.bed")[0]))
             {
                 Assert.Equal("chr\tstart\tstop\tname\t-1xlog10(p-value)\tstrand", reader.ReadLine());
-                line = reader.ReadLine();
-                Assert.True("chr1\t10\t20\tmspc_peak_1\t7.12\t." == line || "chr1\t4\t12\tmspc_peak_3\t19.9\t." == line);
-                line = reader.ReadLine();
-                Assert.True("chr2\t25\t35\tmspc_peak_2\t5.507\t." == line || "chr2\t30\t45\tmspc_peak_4\t9\t." == line);
+
+                columns = reader.ReadLine().Split('\t');
+                Assert.True(
+                    columns[0] == "chr1" &&
+                    (columns[1] == "10" || columns[1] == "4") &&
+                    (columns[2] == "20" || columns[2] == "12") &&
+                    columns[3].ToLower().StartsWith("mspc_peak_") &&
+                    (columns[4] == "7.12" || columns[4] == "19.9") &&
+                    columns[5] == ".");
+
+                columns = reader.ReadLine().Split('\t');
+                Assert.True(
+                    columns[0] == "chr2" &&
+                    (columns[1] == "25" || columns[1] == "30") &&
+                    (columns[2] == "35" || columns[2] == "45") &&
+                    columns[3].ToLower().StartsWith("mspc_peak_") &&
+                    (columns[4] == "5.507" || columns[4] == "9") &&
+                    columns[5] == ".");
+
                 Assert.Null(reader.ReadLine());
             }
 
