For API generation, I have multiple assemblies with the same root namespace. This clashes because the index files are created at the root level.

Would you accept a PR that creates the index files in the target directories or can we force the generation of a unique name in a different manner?

For example, in this case:

http://docs.catelproject.com/vnext/Catel.htm

A name like this would solve it:

api-reference-catel-core-catel.htm
api-reference-catel-serialization-json-catel.htm