Skip to content

FAIR-imaging/galaxy-tool-test-workflow

Repository files navigation

galaxy-tool-test-workflow

Step 1: Obtain an up-to-date list of tools:

python tools.py

Step 2: Create a set of test TIFF images:

python create_test_data.py

Step 4: Set GALAXY_API_KEY environment variable and run the Galaxy test workflow:

planemo run test_tools.ga test_tools-job.yml \
    --engine external_galaxy \
    --galaxy_url https://usegalaxy.eu \
    --galaxy_user_key $GALAXY_API_KEY \
    --test_output_xunit tests.xunit \
    --simultaneous_uploads \
    --no_early_termination

Step 5: Write test results as CSV:

python summarize_xunit_results.py tests.xunit --csv results

Contributors

Languages