#683 Revamp data loading #695

MichaelStritt · 2021-07-02T12:19:43Z

Linked issue

Check out #683

MichaelStritt · 2021-07-05T14:42:15Z

QC Meeting (Henk & Michael)

At the end of import master we mention "reinitialization" -> remove that 👍 Fixed in c3d8c31
Print logo & settings -> both lines to one subfunction 👍 Fixed in 355ec67
Does check permissions work? -> set to false on default and uncomment it -> run this based on an option? 👍 Fix in separate issue xASL_adm_CheckPermissions option #697
A, B, C, D, E or I, II, III, IV, ... -> Master Script -> for Initialize etc. 👍 Fixed in 08feb5d
No data loading after bids2legacy 👍 Fixed in c65f7f8
Can we move 5. Check ExploreASL parameter file & general settings to data loading script? 👍 Fixed in 07d62e5
Can we move xASL_init_DefineDataDependentSettings to data loading script? 👍 Fixed in 61799df
addExploreASLDirectory(x.MyPath) add semicolon 👍 Fixed in e1ee6cc

MichaelStritt · 2021-07-05T18:33:21Z

Test: data import

>> pathTest = 'M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer';
>> x = ExploreASL(pathTest,1,0,0);
ExploreASL will run the import workflow and will run the initialization...


==============================================================================================
 ________                      __                                 ______    ______   __        
/        |                    /  |                               /      \  /      \ /  |      
########/  __    __   ______  ## |  ______    ______    ______  /######  |/######  |## |      
## |__    /  \  /  | /      \ ## | /      \  /      \  /      \ ## |__## |## \__##/ ## |      
##    |   ##  \/##/ /######  |## |/######  |/######  |/######  |##    ## |##      \ ## |      
#####/     ##  ##<  ## |  ## |## |## |  ## |## |  ##/ ##    ## |######## | ######  |## |      
## |_____  /####  \ ## |__## |## |## \__## |## |      ########/ ## |  ## |/  \__## |## |_____ 
##       |/##/ ##  |##    ##/ ## |##    ##/ ## |      ##       |## |  ## |##    ##/ ##       |
########/ ##/   ##/ #######/  ##/  ######/  ##/        #######/ ##/   ##/  ######/  ########/ 
                    ## |                                                                      
                    ## |                                                                      
                    ##/  

==================================== ExploreASL Settings =====================================
Dataset Root        ...nt\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer
Import Modules      DCM2NII NII2BIDS DEFACE BIDS2LEGACY
Process Modules     
bPause              False
iWorker             1
nWorkers            1
==============================================================================================
ExploreASL v1.8.0_BETA initialized ... 

Matching files:
    'Sub103\ASL'
    'Sub103\T1w'

#=2
Running import (i.e. dcm2niiX)
==============================================================================================
Importing subject=Sub103_1:   
>>> Subject=Sub103, visit=1, session=1, scan=ASL4D
executing: ["M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\ExploreASL\External\MRIcron\20190902\dcm2nii.exe" -f "%f_%p_%t_%s_%r" -o "M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\ASL_1\dcm2nii_temp_ASL4D" "M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\sourcedata\Sub103\ASL\i1445064.MRDC..dcm"]
Chris Rorden's dcm2niiX version v1.0.20190902  (JP2:OpenJPEG) (JP-LS:CharLS) MSC1900 (64-bit Windows) 
Found 80 DICOM file(s) 
Warning: Empty protocol name(s) (0018,1030) 
Warning: Unable to append protocol name (0018,1030) to filename (it is empty). 
Convert 40 DICOM as M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\ASL_1\dcm2nii_temp_ASL4D\ASL__20170920100637_4_1 (128x128x40x1) 
Warning: Unable to append protocol name (0018,1030) to filename (it is empty). 
Convert 40 DICOM as M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\ASL_1\dcm2nii_temp_ASL4D\ASL__20170920100637_4_41 (128x128x40x1) 
Conversion required 0.459000 seconds. 
==============================================================================================
Chris Rorden's dcm2niiX version v1.0.20190902  (JP2:OpenJPEG) (JP-LS:CharLS) MSC1900 (64-bit Windows)
Found 80 DICOM file(s)
Warning: Empty protocol name(s) (0018,1030)
Warning: Unable to append protocol name (0018,1030) to filename (it is empty).
Convert 40 DICOM as M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\ASL_1\dcm2nii_temp_ASL4D\ASL__20170920100637_4_1 (128x128x40x1)
Warning: Unable to append protocol name (0018,1030) to filename (it is empty).
Convert 40 DICOM as M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\ASL_1\dcm2nii_temp_ASL4D\ASL__20170920100637_4_41 (128x128x40x1)
Conversion required 0.459000 seconds.
==============================================================================================
status: 0
Recreating parameter file: M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\ASL_1\ASL4D_4_00001.json
Recreating parameter file: M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\ASL_1\ASL4D_4_00041.js01%Parameter RescaleSlope not found, default used
Parameter RescaleSlopeOriginal not found, default used
Parameter MRScaleSlope not found, default used
Parameter RescaleIntercept not found, default used
Parameter AcquisitionTime not found, default used
Parameter NumberOfTemporalPositions not found, default used
Parameter RWVIntercept not found, default used
Parameter RWVSlope not found, default used
Parameter AssetRFactor not found, default used
Parameter EffectiveEchoSpacing not found, default us51%Parameter RescaleSlope not found, default used
Parameter RescaleSlopeOriginal not found, default used
Parameter MRScaleSlope not found, default used
Parameter RescaleIntercept not found, default used
Parameter AcquisitionTime not found, default used
Parameter NumberOfTemporalPositions not found, default used
Parameter RWVIntercept not found, default used
Parameter RWVSlope not found, default used
Parameter AssetRFactor not found, default used
Parameter EffectiveEchoSpacing not found, default used
Parameter InversionTime not found, default us100%Field ImageType contains empty fields, skipping
Field ImageType contains empty fields, skipping
ASL context: deltam,m0scan
Sorted NIfTIs based on InstanceNumbers...
Warning: concatenating multiple NIfTIs & jsons as output from dcm2niiX
Corrected dcm2niiX output for GE files and found the correct scan order:
M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\ASL_1\ASL4D.nii
deltam,m0scan
>>> Subject=Sub103, visit=1, session=1, scan=T1w
executing: ["M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\ExploreASL\External\MRIcron\20190902\dcm2nii.exe" -f "%f_%p_%t_%s_%r" -o "M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\T1w_1\dcm2nii_temp_T1w" "M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\sourcedata\Sub103\T1w\i1444892.MRDC..dcm"]
Chris Rorden's dcm2niiX version v1.0.20190902  (JP2:OpenJPEG) (JP-LS:CharLS) MSC1900 (64-bit Windows) 
Found 172 DICOM file(s) 
Warning: Empty protocol name(s) (0018,1030) 
Warning: Unable to append protocol name (0018,1030) to filename (it is empty). 
Convert 172 DICOM as M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\T1w_1\dcm2nii_temp_T1w\T1w__20170920100637_3_1 (256x256x172x1) 
Conversion required 1.739000 seconds. 
==============================================================================================
Chris Rorden's dcm2niiX version v1.0.20190902  (JP2:OpenJPEG) (JP-LS:CharLS) MSC1900 (64-bit Windows)
Found 172 DICOM file(s)
Warning: Empty protocol name(s) (0018,1030)
Warning: Unable to append protocol name (0018,1030) to filename (it is empty).
Convert 172 DICOM as M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\T1w_1\dcm2nii_temp_T1w\T1w__20170920100637_3_1 (256x256x172x1)
Conversion required 1.739000 seconds.
==============================================================================================
status: 0
Recreating parameter file: M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\temp\Sub103\T1w_1\T1w.js00%Parameter RescaleSlope not found, default used
Parameter RescaleSlopeOriginal not found, default used
Parameter MRScaleSlope not found, default used
Parameter RescaleIntercept not found, default used
Parameter AcquisitionTime not found, default used
Parameter NumberOfTemporalPositions not found, default used
Parameter RWVIntercept not found, default used
Parameter RWVSlope not found, default used
Parameter AssetRFactor not found, default used
Parameter EffectiveEchoSpacing not found, default used
Parameter GELabelingDuration not found, default us100%Field ImageType contains empty fields, skipping

dataset_description.json is missing the following RECOMMENDED fields: 
HEDVersion, DatasetType, License
Missing Recommended ASL fields: SliceEncodingDirection, LabelingOrientation

The field ArterialSpinLabelingType is PCASL, please check the dependencies below:
The recommended fields are missing: PCASLType, LabelingPulseAverageGradient, LabelingPulseMaximumGradient, LabelingPulseAverageB1, LabelingPulseDuration, LabelingPulseFlipAngle, LabelingPulseInterval

Defacing image for privacy reasons...

-----------------------------------------------------------------------
Running SPM job 'De-face Images'
Done    'De-face Images'
Done

xASL_Move: overwriting M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\rawdata\sub-Sub103\anat\sub-Sub103_T1w.nii
There is no dataPar.json file in the study root directory. Default settings will be used...
Parsing BIDS scans: 100%
Note that any warnings may have only printed once if they were repeated for multiple scans
Always run your rawdata folder through the BIDS validator first and aim to avoid warnings
Converting from BIDS to Legacy: M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunte100%
M0 parsed for M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer\derivatives\ExploreASL\sub-Sub103\ASL_1\ASL4D.nii.gz
Creating default dataPar.json since file was not found...
Overwriting x.dir.dataPar...

Test: data loading

>> x = ExploreASL(pathTest,0,0,0);
ExploreASL will load the dataset...


==============================================================================================
 ________                      __                                 ______    ______   __        
/        |                    /  |                               /      \  /      \ /  |      
########/  __    __   ______  ## |  ______    ______    ______  /######  |/######  |## |      
## |__    /  \  /  | /      \ ## | /      \  /      \  /      \ ## |__## |## \__##/ ## |      
##    |   ##  \/##/ /######  |## |/######  |/######  |/######  |##    ## |##      \ ## |      
#####/     ##  ##<  ## |  ## |## |## |  ## |## |  ##/ ##    ## |######## | ######  |## |      
## |_____  /####  \ ## |__## |## |## \__## |## |      ########/ ## |  ## |/  \__## |## |_____ 
##       |/##/ ##  |##    ##/ ## |##    ##/ ## |      ##       |## |  ## |##    ##/ ##       |
########/ ##/   ##/ #######/  ##/  ######/  ##/        #######/ ##/   ##/  ######/  ########/ 
                    ## |                                                                      
                    ## |                                                                      
                    ##/  

==================================== ExploreASL Settings =====================================
Dataset Root        ...nt\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer
Import Modules      
Process Modules     
bPause              False
iWorker             1
nWorkers            1
==============================================================================================
ExploreASL v1.8.0_BETA initialized ... 
Automatically defining sessions...
==================================== Additional Settings =====================================
1 scans - 0 exclusions, resulting in 1 scans of: 
Longitudinal timePoint 1 = 1 scans - 0 exclusions = 1 scans
ASL sessions: 1

Ancillary data, sets: 4 sets are defined for 1 "SubjectsSessions"
Set 1 = "session" options "ASL_1", codes for paired data
Set 2 = "LongitudinalTimePoint" options "TimePoint_1", codes for paired data
Set 3 = "SubjectNList" options "SubjectNList", codes for paired data
Set 4 = "Site" options "SingleSite", codes for two-sample data
x.D.ROOT            M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCA ...
                    ... SL_3Dspiral_volunteer\derivatives\ExploreASL
x.DELETETEMP        1 (delete temporary files)
x.Quality           1 (0 = fast try-out; 1 = normal high quality)

==============================================================================================

Test: data processing with pause

>> x = ExploreASL(pathTest,0,1,1);
ExploreASL will run the processing pipeline...


==============================================================================================
 ________                      __                                 ______    ______   __        
/        |                    /  |                               /      \  /      \ /  |      
########/  __    __   ______  ## |  ______    ______    ______  /######  |/######  |## |      
## |__    /  \  /  | /      \ ## | /      \  /      \  /      \ ## |__## |## \__##/ ## |      
##    |   ##  \/##/ /######  |## |/######  |/######  |/######  |##    ## |##      \ ## |      
#####/     ##  ##<  ## |  ## |## |## |  ## |## |  ##/ ##    ## |######## | ######  |## |      
## |_____  /####  \ ## |__## |## |## \__## |## |      ########/ ## |  ## |/  \__## |## |_____ 
##       |/##/ ##  |##    ##/ ## |##    ##/ ## |      ##       |## |  ## |##    ##/ ##       |
########/ ##/   ##/ #######/  ##/  ######/  ##/        #######/ ##/   ##/  ######/  ########/ 
                    ## |                                                                      
                    ## |                                                                      
                    ##/  

==================================== ExploreASL Settings =====================================
Dataset Root        ...nt\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer
Import Modules      
Process Modules     STRUCTURAL ASL POPULATION 
bPause              True
iWorker             1
nWorkers            1
==============================================================================================
ExploreASL v1.8.0_BETA initialized ... 
Automatically defining sessions...
==================================== Additional Settings =====================================
1 scans - 0 exclusions, resulting in 1 scans of: 
Longitudinal timePoint 1 = 1 scans - 0 exclusions = 1 scans
ASL sessions: 1

Ancillary data, sets: 4 sets are defined for 1 "SubjectsSessions"
Set 1 = "session" options "ASL_1", codes for paired data
Set 2 = "LongitudinalTimePoint" options "TimePoint_1", codes for paired data
Set 3 = "SubjectNList" options "SubjectNList", codes for paired data
Set 4 = "Site" options "SingleSite", codes for two-sample data
x.D.ROOT            M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCA ...
                    ... SL_3Dspiral_volunteer\derivatives\ExploreASL
x.DELETETEMP        1 (delete temporary files)
x.Quality           1 (0 = fast try-out; 1 = normal high quality)

==============================================================================================


Press any key to start processing & analyzing
Please ensure you have a read-only copy of your original data as they may be overwritten
Or press CTRL/command-C to cancel...  
...

Test: data processing without pause

>> x = ExploreASL(pathTest,0,1,0);
ExploreASL will run the processing pipeline...


==============================================================================================
 ________                      __                                 ______    ______   __        
/        |                    /  |                               /      \  /      \ /  |      
########/  __    __   ______  ## |  ______    ______    ______  /######  |/######  |## |      
## |__    /  \  /  | /      \ ## | /      \  /      \  /      \ ## |__## |## \__##/ ## |      
##    |   ##  \/##/ /######  |## |/######  |/######  |/######  |##    ## |##      \ ## |      
#####/     ##  ##<  ## |  ## |## |## |  ## |## |  ##/ ##    ## |######## | ######  |## |      
## |_____  /####  \ ## |__## |## |## \__## |## |      ########/ ## |  ## |/  \__## |## |_____ 
##       |/##/ ##  |##    ##/ ## |##    ##/ ## |      ##       |## |  ## |##    ##/ ##       |
########/ ##/   ##/ #######/  ##/  ######/  ##/        #######/ ##/   ##/  ######/  ########/ 
                    ## |                                                                      
                    ## |                                                                      
                    ##/  

==================================== ExploreASL Settings =====================================
Dataset Root        ...nt\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer
Import Modules      
Process Modules     STRUCTURAL ASL POPULATION 
bPause              False
iWorker             1
nWorkers            1
==============================================================================================
ExploreASL v1.8.0_BETA initialized ... 
Automatically defining sessions...
==================================== Additional Settings =====================================
1 scans - 0 exclusions, resulting in 1 scans of: 
Longitudinal timePoint 1 = 1 scans - 0 exclusions = 1 scans
ASL sessions: 1

Ancillary data, sets: 4 sets are defined for 1 "SubjectsSessions"
Set 1 = "session" options "ASL_1", codes for paired data
Set 2 = "LongitudinalTimePoint" options "TimePoint_1", codes for paired data
Set 3 = "SubjectNList" options "SubjectNList", codes for paired data
Set 4 = "Site" options "SingleSite", codes for two-sample data
x.D.ROOT            M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCA ...
                    ... SL_3Dspiral_volunteer\derivatives\ExploreASL
x.DELETETEMP        1 (delete temporary files)
x.Quality           1 (0 = fast try-out; 1 = normal high quality)

==============================================================================================


Running xASL_module_Structural ...   
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
=== Subject: sub-Sub103, Module: xASL_module_Structural,  05-Jul-2021 20:26:26 ===
...

Output argument warning

>> ExploreASL_Master(pathTest,0,0,0);
ExploreASL will load the dataset...


==============================================================================================
 ________                      __                                 ______    ______   __        
/        |                    /  |                               /      \  /      \ /  |      
########/  __    __   ______  ## |  ______    ______    ______  /######  |/######  |## |      
## |__    /  \  /  | /      \ ## | /      \  /      \  /      \ ## |__## |## \__##/ ## |      
##    |   ##  \/##/ /######  |## |/######  |/######  |/######  |##    ## |##      \ ## |      
#####/     ##  ##<  ## |  ## |## |## |  ## |## |  ##/ ##    ## |######## | ######  |## |      
## |_____  /####  \ ## |__## |## |## \__## |## |      ########/ ## |  ## |/  \__## |## |_____ 
##       |/##/ ##  |##    ##/ ## |##    ##/ ## |      ##       |## |  ## |##    ##/ ##       |
########/ ##/   ##/ #######/  ##/  ######/  ##/        #######/ ##/   ##/  ######/  ########/ 
                    ## |                                                                      
                    ## |                                                                      
                    ##/  

==================================== ExploreASL Settings =====================================
Dataset Root        ...nt\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCASL_3Dspiral_volunteer
Import Modules      
Process Modules     
bPause              False
iWorker             1
nWorkers            1
==============================================================================================
ExploreASL v1.8.0_BETA initialized ... 
Automatically defining sessions...
==================================== Additional Settings =====================================
1 scans - 0 exclusions, resulting in 1 scans of: 
Longitudinal timePoint 1 = 1 scans - 0 exclusions = 1 scans
ASL sessions: 1

Ancillary data, sets: 4 sets are defined for 1 "SubjectsSessions"
Set 1 = "session" options "ASL_1", codes for paired data
Set 2 = "LongitudinalTimePoint" options "TimePoint_1", codes for paired data
Set 3 = "SubjectNList" options "SubjectNList", codes for paired data
Set 4 = "Site" options "SingleSite", codes for two-sample data
x.D.ROOT            M:\SoftwareDevelopment\MATLAB\m.stritt\Server_xASL\New_TestData\GE_PCA ...
                    ... SL_3Dspiral_volunteer\derivatives\ExploreASL
x.DELETETEMP        1 (delete temporary files)
x.Quality           1 (0 = fast try-out; 1 = normal high quality)

==============================================================================================


Data loading requested but no output structure defined...
Try adding "x = " to the command to load data into the x structure

jan-petr

Very good work! Two small things - bOnlyLoad was sometimes set to 1 and sometimes to true, I have changed that to boolean on all occurrences - check my latest commit. There's a small comment in the code about commentaries. But the rest can be merged.

jan-petr · 2021-07-07T08:04:54Z

ExploreASL_Master.m

-% ExploreASL_Initialize    - This wrapper initializes ExploreASL: managing paths, deployment, etc.
-% ExploreASL_ImportMaster  - Multi-step import workflow for DCM2NII, NII2BIDS & BIDS2LEGACY.
-% ExploreASL_ProcessMaster - Multi-step processing workflow for the STRUCTURAL, ASL and POPULATION module.
+% I. Initialization:         ExploreASL_Initialize


Not a huge issue of course. But is there any reason to have Roman instead Arabic numbers?

@jan-petr: I talked with Henk about that. We thought it could be helpful if we do not use arabic numbers for the import and process modules which are themselves part of the ExploreASL_Master workflow. Alternatively we could use A, B, C, D etc.

Now we have:

I. Initialization

II. Import Master

1. DICOM TO NII

2. NII TO BIDS

3. DEFACE

4. BIDS TO Legacy

III. Data loading

IV. Print user feedback (before pipeline)

V. Processing Master

1. Structural Module

2. ASL Module

3. Population Module

VI. Print user feedback (after pipeline)

Moved data loading to separate script, simplified master script, moved user feedback to separate script

I simplified the behavior by introducing bLoadData and removing bReinitialize. Within the data loading script I simplified the condition as well.

I moved the user feedback to the print user feedback script

Move function to separate script. Fix nargout bug.

MichaelStritt added the revamp Restructuring of ExploreASL label Jul 2, 2021

MichaelStritt added this to the Release 1.8.0 milestone Jul 2, 2021

MichaelStritt self-assigned this Jul 2, 2021

MichaelStritt requested review from HenkMutsaerts and jan-petr July 2, 2021 13:45

MichaelStritt linked an issue Jul 2, 2021 that may be closed by this pull request

Modularize data loading of ExploreASL #683

Closed

jan-petr approved these changes Jul 7, 2021

View reviewed changes

MichaelStritt and others added 17 commits July 7, 2021 11:22

#683 Initial implementation

9aba4bf

Moved data loading to separate script, simplified master script, moved user feedback to separate script

#683 Get rid of bReinitialize

a96e434

I simplified the behavior by introducing bLoadData and removing bReinitialize. Within the data loading script I simplified the condition as well.

#683 Simplify ExploreASL_Master further

02e147a

I moved the user feedback to the print user feedback script

#683 Get rid of bOnlyLoad (1)

98897e4

#683 Get rid of bOnlyLoad (2)

88820b4

#683 Minor bugfixing

b997ead

Move function to separate script. Fix nargout bug.

#683 ExploreASL_ImportMaster: Remove comment about reinitialization

377f4e4

#683 ExploreASL_Initialize: Simplify logo printing

7967467

#683 ExploreASL_Master: Improve master script overview

e74f35c

#683 ExploreASL_Initialize: No data loading after BIDS2Legacy

914b401

#683 ExploreASL_Initialize: Add semicolon

142ce93

#683 Move xASL_init_DefineDataDependentSettings

6dc116e

#683 Move data par file code section to data loading

eba436e

#683 Optimize select par file workflow

3f3ca6e

#683 Fix: pausing didnt work anymore

185cab4

#683 Super minor fix

0db47a1

#683 bLoadData set as boolean

4f104ea

MichaelStritt force-pushed the revamp-#683_DataLoading branch from 6605a82 to 4f104ea Compare July 7, 2021 09:23

MichaelStritt merged commit 4f104ea into develop Jul 7, 2021

MichaelStritt deleted the revamp-#683_DataLoading branch July 7, 2021 09:24

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#683 Revamp data loading #695

#683 Revamp data loading #695

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edited

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#683 Revamp data loading #695

#683 Revamp data loading #695

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MichaelStritt commented Jul 2, 2021

Linked issue

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MichaelStritt commented Jul 5, 2021 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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QC Meeting (Henk & Michael)

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MichaelStritt commented Jul 5, 2021

Test: data import

Test: data loading

Test: data processing with pause

Test: data processing without pause

Output argument warning

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MichaelStritt commented Jul 5, 2021 •

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