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Fix multi-TE M0 processing #1411

@jan-petr

Description

@jan-petr

Description

For multi-TE M0s, we should take only the first shortest TE to be used for ASL scaling.

Tasks

  • Identify multi-TE are being used.
  • Take only the shortest TE and calculate M0 image only from that TE.
  • Make sure that in the subsequent calculation, only that TE is used. line 250 in xASL_wrp_Quantify.
  • Test that DEBBIE HAD04 works now.
  • Take TE closest to ASL - this actually doesn't make sense as ASL and M0 are designed with short TEs. And the only reason to have longer TEs is when mutli-TE is done. So there's no reason to have M0 with multi-TE and having another TE than the shortest to be the closes to ASL. So this option is superfluous as it will always be fulfilled with shortest TE.
  • Make a warning that TEs are being stripped
  • Check that DEBBIE HAD04 CBF looks good.

Release notes

Fix multi-TE M0 quantification by selecting shortest TE.

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