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Move ruff settings to separate toml file #641

@DaniBodor

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@DaniBodor

Currently, these settings take p ~1/3 of the pyproject.toml file. I think it would be nice to keep these separate tom have things a bit more
orderly and transparent.

I would like to hold off on this until #636 is reviewed and finished, as that PR makes changes to the ruff settings.

blocked by #636

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