>>> queries.process(                                                                                                                                                                                            
...     prefix=os.path.join(processed_data_path, "residue", "proc"),                                                                                                                                            
...     feature_modules=[components, contact],                                                                                                                                                                  
...     cpu_count=8,                                                                                                                                                                                            
...     combine_output=False,                                                                                                                                                                                   
...     grid_settings=grid_settings,                                                                                                                                                                            
...     grid_map_method=grid_map_method,                                                                                                                                                                        
... )                                                                                                                                                                                                           
                                                                                                                                                                                                                
Graph/Query with ID residue-srv:A:6:Phenylalanine->Cysteine:pdb1tff ran into an Exception (ValueError: Residue not found in data_raw/srv/pdb/pdb1tff.ent: A 6), and it has not been written to the hdf5 file. Mo
re details below:                                                                                                                                                                                               
Residue not found in data_raw/srv/pdb/pdb1tff.ent: A 6                                                                                                                                                          
Traceback (most recent call last):                                                                                                                                                                              
  File "/opt/tools/deg/deeprank2/deeprank2/query.py", line 477, in _process_one_query                                                                                                                           
    graph = query.build(self._feature_modules)                                                                                                                                                                  
  File "/opt/tools/deg/deeprank2/deeprank2/query.py", line 202, in build                                                                                                                                        
    graph = self._build_helper()                                                                                                                                                                                
  File "/opt/tools/deg/deeprank2/deeprank2/query.py", line 290, in _build_helper                                                                                                                                
    raise ValueError(msg)                                                                                                                                                                                       
ValueError: Residue not found in data_raw/srv/pdb/pdb1tff.ent: A 6