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Fix Fragpipe proteoform parsing#124

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RalfG merged 3 commits intoCompOmics:mainfrom
levitsky:fix/fragpipe-proforma
Oct 27, 2025
Merged

Fix Fragpipe proteoform parsing#124
RalfG merged 3 commits intoCompOmics:mainfrom
levitsky:fix/fragpipe-proforma

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@levitsky
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Fixes #123.

Builds a more comprehensive ProForma string using "Assigned Modifications" in Fragpipe output.

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Thanks for noting and implementing, @levitsky! 🙌

@RalfG RalfG merged commit 4742ee0 into CompOmics:main Oct 27, 2025
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@RalfG RalfG added bug Something isn't working io labels Oct 27, 2025
@RalfG RalfG added this to the v1.5.0 milestone Oct 27, 2025
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Fragpipe parser produces semantically invalid ProForma sequences

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