PSMList: Use np.fromiter when using a string as accessor (e.g. psm_list["peptidoform"])#102
Merged
PSMList: Use np.fromiter when using a string as accessor (e.g. psm_list["peptidoform"])#102
psm_list["peptidoform"])#102Conversation
…f amino acids and modifications if all peptidoforms have the same length
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #102 +/- ##
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+ Coverage 67.63% 67.66% +0.03%
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Files 27 27
Lines 2629 2626 -3
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- Hits 1778 1777 -1
+ Misses 851 849 -2
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Changed
psm_list["peptidoform"]),np.fromiteris now used instead ofnp.array. This fixes an issue where if all peptidoforms have the same length, a 3D array of parsed sequences (amino acids and modifications) was be returned instead of an array ofPeptidoformobject. However, this does mean that all resulting arrays will have theobjectdtype instead of the previously coerced dtypes. This might lead to issues downstream.