Hi all!

My name is Antonio. I came across this tool forwarded by Marc Vaudel in this google group entry https://groups.google.com/forum/#!topic/peptide-shaker/Lqe7lYKLcHI (from Peptide Shaker). I think it's great. I am also surprised that you can support the analysis of RAW files as input within a Linux environment, as msconvert from ProteoWizard only supports that in Windows. I can see you make use of an executable called "txic_json.exe", which you call using mono https://github.com/compomics/moFF/blob/master/moff.py.
Would it be possible to extract this conversion functionality as a script by itself, so that RAW files can be converted to mzML or mgf in Linux?

Thank you very much for your help in advance!

Best regards

Antonio