Description

This PR is a fast-follow to a conversation had on 4/30 in which we established we wanted a standardized performance calculation script to be uploaded to our repo. This script integrates into the run_test.py script executed as part of algorithm tests, and gives us calculations for: raw counting stats (TP, FP, TN, FN), derived match quality stats (sens, spec, F1, PPV), and labels for matches graded possible by either system. This should standardize the way we calculate and report performance going forward.

NOTE: The change numbers look massive, but that's because we got the all-clear to upload our more robust test and seed data sets into the algorithm test configuration. There are only a couple changed code files, most of this is CSV uploading.

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Checklist

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• I have ensured that the pull request is of a manageable size, allowing it to be reviewed within a single session.
• I have reviewed my changes to ensure they are clear, concise, and well-documented.
• I have updated the documentation, if applicable.
• I have added or updated test cases to cover my changes, if applicable.
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Checklist for Reviewers

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• The code follows best practices and conventions.
• The changes implement the desired functionality or fix the reported issue.
• The tests cover the new changes and pass successfully.
• Any potential edge cases or error scenarios have been considered.