Description

Story: https://breedinginsight.atlassian.net/browse/BI-2354

• Made the code that collects invalid ontology terms for the error message do a case-insensitive contains (thanks Nick for the utility method).
• Modified aforementioned containsCaseInsensitive utility method to work on any Collection<String> so I could use it on a Set<String> as well as a List<String>.
• The second place I updated the code to be case-insensitive (in ExperimentProcessor.java) seems to be unused, but I updated the logic in case it is ever used again.

Testing

1. Import germplasm: 100_germplasm_QUICK.csv.
2. Import ontology: R2D2_Active_Ontology_2024-10-30_04-56-59+0000.xlsx.
3. Try importing this experiment file before and after fixing the "Fry Colors" ontology term (should be "Fry Color"), with different casing: Exp_Error.xls. The error message should only list ontology terms that are misspelled, it should be case-insensitive. And when the misspelling is corrected, the ontology terms should be accepted with any casing.

Checklist:

• I have performed a self-review of my own code
• I have tested my code and ensured it meets the acceptance criteria of the story
• I have tested that my code works with both the brapi-java-server and BreedBase
• I have create/modified unit tests to cover this change
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to documentation
• I have run TAF: <please include a link to TAF run>