# Remote refocus enables class-leading spatiotemporal resolution in 4D optical microscopy

<a href="https://doi.org/10.5281/zenodo.1146083"><img src="https://img.shields.io/badge/DOI-10.5281/zenodo.1146083-blue.svg" alt="DOI"></a>

A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here:
https://calico.github.io/remote_refocus (hosted via the Calico Labs institutional GitHub account)
or here:
https://amsikking.github.io/remote_refocus (hosted via Alfred Millett-Sikking's personal GitHub account)
or here:
https://andrewgyork.github.io/remote_refocus (hosted via Andrew York's personal GitHub account)

This repository is intended to hold a (mostly) self-contained scientific publication. It contains:

* HTML, javascript, CSS, and small images (`index.html`, `appendix.html`, and the `javascript`, `stylesheets`, and `images` directories)
* A (limited) PDF version of the publication; note that this does not include animated/interactive figures.
* Code which produces figures (in the `figure_generation` directory). You can run and modify this code to verify and explore our results. See `figure_generation/README.md` for instructions how to run the figure generation code.

Some files aren't suitable for version control, (e.g. raw data, large numbers of pre-rendered figure images, etc). These are stored in a sister repository:

https://github.com/AndrewGYork/remote_refocus_data

Hopefully this makes it easier to manage big, non-text files without risking the faithful version control of small, important text-based files stored here.

<a rel="license" href="http://creativecommons.org/licenses/by/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by/4.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>.

![social_preview](https://github.com/amsikking/remote_refocus/blob/master/social_preview.png)
