When converting a certain .klc file (attached), I get the error klfc: warning: dead key ‘ְ’ is not defined., and the converted output files (also attached) do not contain the dead key definition. The dead key is definitely defined, on lines 95-102 of the input. I've attached my input file, as well as all of the output files produced by the conversion (which do not include the dead key).

he_phon.klc.txt (renamed to .txt to attach)
output.zip (zipped)