{"id":629,"date":"2018-06-08T18:34:37","date_gmt":"2018-06-08T18:34:37","guid":{"rendered":"https:\/\/docs.flowjo.com\/seqgeq\/?page_id=629"},"modified":"2020-03-05T23:59:13","modified_gmt":"2020-03-05T23:59:13","slug":"analysis-workflows","status":"publish","type":"page","link":"https:\/\/docs.flowjo.com\/seqgeq\/analysis-workflows\/","title":{"rendered":"Analysis Workflows"},"content":{"rendered":"

There are at least as many different possibilities when planning an analysis strategy in SeqGeq, as there are cell types to explore. <\/span><\/p>\n

In the following pages we detail some broad possible directions a researcher might take, and considerations involved for each.<\/span><\/p>\n

 <\/p>\n

Overview<\/span><\/h1>\n

The tack used for a given analysis should be tailored to the model investigated, the questions a researcher is attempting to answer, and the technology used to acquire the data. <\/span><\/p>\n

Keep in mind that each step in an analysis protocol can be re-iterated over deeper subpopulations discovered, as well as the initial sample. You won\u2019t always get the best results on your first try – so try adjusting the parameter quality gating for downstream analysis, or adjusting settings for dimensionality reduction visualizations to improve on cluster separation.<\/p>\n

Don\u2019t be afraid to mix and match techniques! These workflows are only suggestions and a robust analysis protocol may use tool described in any of the following workflows.<\/p>\n

 <\/p>\n

Workflows<\/span><\/h1>\n