Package PubChemR updated to version 3.0.0 with previous version 2.1.8 dated 2025-12-04

Fri, 06 Mar 2026 19:02:00 CDT

Title: Interface to the 'PubChem' Database for Chemical Data Retrieval
Description: Provides an interface to the 'PubChem' database via the PUG REST <https://pubchem.ncbi.nlm.nih.gov/docs/pug-rest> and PUG View <https://pubchem.ncbi.nlm.nih.gov/docs/pug-view> services. This package allows users to automatically access chemical and biological data from 'PubChem', including compounds, substances, assays, and various other data types. Functions are available to retrieve data in different formats, perform searches, and access detailed annotations.
Author: Selcuk Korkmaz [aut, cre] , Bilge Eren Yamasan [aut] , Dincer Goksuluk [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>

Diff between PubChemR versions 2.1.8 dated 2025-12-04 and 3.0.0 dated 2026-03-06

 DESCRIPTION                            |   26 +-
 MD5                                    |  122 +++++++---
 NAMESPACE                              |   54 +++-
 R/00_globals.R                         |   14 +
 R/download.R                           |   19 +
 R/get_aids.R                           |   60 ----
 R/get_all_sources.R                    |    4
 R/get_assays.R                         |   61 -----
 R/get_biological_test_results.R        |only
 R/get_cids.R                           |   61 -----
 R/get_compounds.R                      |   58 ----
 R/get_json.R                           |   93 +++++--
 R/get_properties.R                     |   75 +-----
 R/get_pubchem.R                        |   87 +++++--
 R/get_pug_rest.R                       |   70 ++---
 R/get_pug_view.R                       |   41 ++-
 R/get_sdf.R                            |   95 +++++--
 R/get_sids.R                           |   59 ----
 R/get_substances.R                     |  141 -----------
 R/get_synonyms.R                       |   43 ---
 R/getter_functions.R                   |  401 +++++++++++++++++++++++++++------
 R/internal_utils.R                     |only
 R/pc_api.R                             |only
 R/pc_nextgen_helpers.R                 |only
 R/pc_phase3.R                          |only
 R/pc_phase4.R                          |only
 R/printMethods.R                       |   26 +-
 R/request.R                            |   49 ----
 inst/benchmarks                        |only
 man/AIDs-SIDs-CIDs.Rd                  |    7
 man/download.Rd                        |    5
 man/get_biological_test_results.Rd     |only
 man/get_pug_view.Rd                    |    9
 man/get_substances.Rd                  |   62 -----
 man/has_hits.Rd                        |only
 man/instance.Rd                        |    8
 man/pc_activity_matrix.Rd              |only
 man/pc_activity_outcome_map.Rd         |only
 man/pc_assay.Rd                        |only
 man/pc_assay_activity_long.Rd          |only
 man/pc_batch.Rd                        |only
 man/pc_benchmark.Rd                    |only
 man/pc_benchmark_harness.Rd            |only
 man/pc_cache_clear.Rd                  |only
 man/pc_cache_info.Rd                   |only
 man/pc_capabilities.Rd                 |only
 man/pc_collect.Rd                      |only
 man/pc_compound.Rd                     |only
 man/pc_config.Rd                       |only
 man/pc_cross_domain_join.Rd            |only
 man/pc_example_assaysummary_payload.Rd |only
 man/pc_example_feature_table.Rd        |only
 man/pc_export_model_data.Rd            |only
 man/pc_feature_table.Rd                |only
 man/pc_identifier_map.Rd               |only
 man/pc_lifecycle_policy.Rd             |only
 man/pc_model_matrix.Rd                 |only
 man/pc_poll.Rd                         |only
 man/pc_profile.Rd                      |only
 man/pc_property.Rd                     |only
 man/pc_request.Rd                      |only
 man/pc_response.Rd                     |only
 man/pc_resume_batch.Rd                 |only
 man/pc_sdq_bioactivity.Rd              |only
 man/pc_similarity_search.Rd            |only
 man/pc_submit.Rd                       |only
 man/pc_substance.Rd                    |only
 man/pc_to_chemminer.Rd                 |only
 man/pc_to_rcdk.Rd                      |only
 man/pubChemData.Rd                     |    6
 man/request_args.Rd                    |    4
 man/retrieve.Rd                        |   20 +
 man/section.Rd                         |    8
 man/sectionList.Rd                     |    4
 man/synonyms.Rd                        |    4
 tests                                  |only
 76 files changed, 934 insertions(+), 862 deletions(-)

More information about PubChemR at CRAN