Package actel updated to version 1.4.0 with previous version 1.3.0 dated 2023-10-18

Fri, 06 Mar 2026 03:02:00 CDT

Title: Acoustic Telemetry Data Analysis
Description: Designed for studies where animals tagged with acoustic tags are expected to move through receiver arrays. This package combines the advantages of automatic sorting and checking of animal movements with the possibility for user intervention on tags that deviate from expected behaviour. The three analysis functions (explore(), migration() and residency()) allow the users to analyse their data in a systematic way, making it easy to compare results from different studies. CJS calculations are based on Perry et al. (2012) <https://www.researchgate.net/publication/256443823_Using_mark-recapture_models_to_estimate_survival_from_telemetry_data>.
Author: Hugo Flavio [aut, cre] , Devon Smith [ctb]
Maintainer: Hugo Flavio <hflavio@dal.ca>

Diff between actel versions 1.3.0 dated 2023-10-18 and 1.4.0 dated 2026-03-06

 actel-1.3.0/actel/man/appendTo.Rd                                                          |only
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 actel-1.4.0/actel/DESCRIPTION                                                              |   30
 actel-1.4.0/actel/MD5                                                                      |  261
 actel-1.4.0/actel/NAMESPACE                                                                |    2
 actel-1.4.0/actel/NEWS.md                                                                  |   44
 actel-1.4.0/actel/R/CJS.R                                                                  |  383 -
 actel-1.4.0/actel/R/actel.R                                                                |   10
 actel-1.4.0/actel/R/check.R                                                                | 1560 +++--
 actel-1.4.0/actel/R/distances.R                                                            |  549 +
 actel-1.4.0/actel/R/explore.R                                                              |  316 -
 actel-1.4.0/actel/R/get.R                                                                  |  555 +
 actel-1.4.0/actel/R/helper.R                                                               |  736 ++
 actel-1.4.0/actel/R/load.R                                                                 | 2929 ++++++----
 actel-1.4.0/actel/R/migration.R                                                            | 1973 ++++--
 actel-1.4.0/actel/R/movements.R                                                            |  148
 actel-1.4.0/actel/R/plot.R                                                                 |  852 ++
 actel-1.4.0/actel/R/preload.R                                                              |  509 +
 actel-1.4.0/actel/R/print.R                                                                |  656 +-
 actel-1.4.0/actel/R/residency.R                                                            |  651 +-
 actel-1.4.0/actel/R/sysdata.rda                                                            |binary
 actel-1.4.0/actel/R/user_interaction.R                                                     |  476 +
 actel-1.4.0/actel/R/widget_setups.R                                                        |  152
 actel-1.4.0/actel/R/z_examples.R                                                           |    6
 actel-1.4.0/actel/R/zzz.R                                                                  |   11
 actel-1.4.0/actel/README.md                                                                |   86
 actel-1.4.0/actel/build/vignette.rds                                                       |binary
 actel-1.4.0/actel/data/additional.residency.results.rda                                    |binary
 actel-1.4.0/actel/data/example.results.rda                                                 |binary
 actel-1.4.0/actel/inst/doc/actel-website.Rmd                                               |    2
 actel-1.4.0/actel/inst/doc/actel-website.html                                              |   38
 actel-1.4.0/actel/man/actel.Rd                                                             |    9
 actel-1.4.0/actel/man/assembleArrayCJS.Rd                                                  |    4
 actel-1.4.0/actel/man/assembleGroupCJS.Rd                                                  |    4
 actel-1.4.0/actel/man/assembleMatrices.Rd                                                  |   11
 actel-1.4.0/actel/man/assembleOutput.Rd                                                    |    3
 actel-1.4.0/actel/man/assembleSectionOverview.Rd                                           |   11
 actel-1.4.0/actel/man/assembleSplitCJS.Rd                                                  |    4
 actel-1.4.0/actel/man/assembleTimetable.Rd                                                 |   22
 actel-1.4.0/actel/man/assembleValidMoves.Rd                                                |    8
 actel-1.4.0/actel/man/blameArrays.Rd                                                       |    2
 actel-1.4.0/actel/man/breakMatricesByArray.Rd                                              |    6
 actel-1.4.0/actel/man/checkArguments.Rd                                                    |   27
 actel-1.4.0/actel/man/checkFirstMove.Rd                                                    |only
 actel-1.4.0/actel/man/checkImpassables.Rd                                                  |    4
 actel-1.4.0/actel/man/checkJumpDistance.Rd                                                 |    8
 actel-1.4.0/actel/man/checkLinearity.Rd                                                    |   23
 actel-1.4.0/actel/man/cjs_args.Rd                                                          |    6
 actel-1.4.0/actel/man/collectStrays.Rd                                                     |    6
 actel-1.4.0/actel/man/completeMatrix.Rd                                                    |    8
 actel-1.4.0/actel/man/convertCodes.Rd                                                      |    3
 actel-1.4.0/actel/man/convertLotekCDMAFile.Rd                                              |only
 actel-1.4.0/actel/man/convertTimes.Rd                                                      |    3
 actel-1.4.0/actel/man/countArrayFailures.Rd                                                |    4
 actel-1.4.0/actel/man/countBackMoves.Rd                                                    |   10
 actel-1.4.0/actel/man/createStandards.Rd                                                   |    3
 actel-1.4.0/actel/man/deleteHelpers.Rd                                                     |    3
 actel-1.4.0/actel/man/distancesMatrix.Rd                                                   |   45
 actel-1.4.0/actel/man/dotList.Rd                                                           |    4
 actel-1.4.0/actel/man/dotMatrix.Rd                                                         |    3
 actel-1.4.0/actel/man/efficiencyMatrix.Rd                                                  |    8
 actel-1.4.0/actel/man/emptyMatrix.Rd                                                       |   12
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 actel-1.4.0/actel/man/excludeTags.Rd                                                       |    9
 actel-1.4.0/actel/man/expFirstArray.Rd                                                     |only
 actel-1.4.0/actel/man/explore.Rd                                                           |   17
 actel-1.4.0/actel/man/findDirectChains.Rd                                                  |    7
 actel-1.4.0/actel/man/findPeers.Rd                                                         |   13
 actel-1.4.0/actel/man/findSecondsPerSection.Rd                                             |    9
 actel-1.4.0/actel/man/firstArrayFailure.Rd                                                 |    4
 actel-1.4.0/actel/man/getSpeeds.Rd                                                         |   13
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 actel-1.4.0/actel/man/getSpeedsCompiler.Rd                                                 |only
 actel-1.4.0/actel/man/getTimes.Rd                                                          |    9
 actel-1.4.0/actel/man/groupMovements.Rd                                                    |    8
 actel-1.4.0/actel/man/loadDetections.Rd                                                    |    3
 actel-1.4.0/actel/man/loadDistances.Rd                                                     |    6
 actel-1.4.0/actel/man/loadDot.Rd                                                           |    6
 actel-1.4.0/actel/man/loadShape.Rd                                                         |   28
 actel-1.4.0/actel/man/loadSpatial.Rd                                                       |   14
 actel-1.4.0/actel/man/loadStudyData.Rd                                                     |   15
 actel-1.4.0/actel/man/migration.Rd                                                         |  123
 actel-1.4.0/actel/man/movementSpeeds.Rd                                                    |    8
 actel-1.4.0/actel/man/oneWayMoves.Rd                                                       |    3
 actel-1.4.0/actel/man/overrideChecks.Rd                                                    |only
 actel-1.4.0/actel/man/parse_arg.Rd                                                         |only
 actel-1.4.0/actel/man/parse_list.Rd                                                        |only
 actel-1.4.0/actel/man/plotDetections.Rd                                                    |    3
 actel-1.4.0/actel/man/plotDot.Rd                                                           |only
 actel-1.4.0/actel/man/preload.Rd                                                           |   15
 actel-1.4.0/actel/man/printIndividuals.Rd                                                  |    3
 actel-1.4.0/actel/man/printMigrationRmd.Rd                                                 |   30
 actel-1.4.0/actel/man/printResidencyRmd.Rd                                                 |   12
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 actel-1.4.0/actel/man/processInnovaseaFile.Rd                                              |only
 actel-1.4.0/actel/man/res_efficiency.Rd                                                    |    6
 actel-1.4.0/actel/man/residency.Rd                                                         |   20
 actel-1.4.0/actel/man/setSpatialStandards.Rd                                               |    3
 actel-1.4.0/actel/man/shapeToRaster.Rd                                                     |   62
 actel-1.4.0/actel/man/simplifyMovements.Rd                                                 |    8
 actel-1.4.0/actel/man/speedReleaseToFirst.Rd                                               |    8
 actel-1.4.0/actel/man/splitDetections.Rd                                                   |    6
 actel-1.4.0/actel/man/transformSpatial.Rd                                                  |    5
 actel-1.4.0/actel/man/transitionLayer.Rd                                                   |   31
 actel-1.4.0/actel/tests/testthat/aux_dotPaths_complex_text_disregard_parallels_false.RData |binary
 actel-1.4.0/actel/tests/testthat/aux_dotPaths_complex_text_disregard_parallels_true.RData  |binary
 actel-1.4.0/actel/tests/testthat/test_CJS_functions.R                                      |   28
 actel-1.4.0/actel/tests/testthat/test_CJS_functions_2_releases.R                           |   39
 actel-1.4.0/actel/tests/testthat/test_array_movement_checks.R                              |  131
 actel-1.4.0/actel/tests/testthat/test_blankWorkspace.R                                     |    2
 actel-1.4.0/actel/tests/testthat/test_convertLotekCDMAFile.R                               |only
 actel-1.4.0/actel/tests/testthat/test_createStandards.R                                    |   10
 actel-1.4.0/actel/tests/testthat/test_distancesMatrix_functions.R                          |   35
 actel-1.4.0/actel/tests/testthat/test_dotList.R                                            |   22
 actel-1.4.0/actel/tests/testthat/test_exampleWorkspace.R                                   |    2
 actel-1.4.0/actel/tests/testthat/test_explore.R                                            |   30
 actel-1.4.0/actel/tests/testthat/test_getSpeeds.R                                          |   13
 actel-1.4.0/actel/tests/testthat/test_helpers.R                                            |   32
 actel-1.4.0/actel/tests/testthat/test_loadDetections.R                                     |    5
 actel-1.4.0/actel/tests/testthat/test_loadDistances.R                                      |    7
 actel-1.4.0/actel/tests/testthat/test_loadDot.R                                            |  110
 actel-1.4.0/actel/tests/testthat/test_loadSpatial.R                                        |    8
 actel-1.4.0/actel/tests/testthat/test_loadStudyData.R                                      |    2
 actel-1.4.0/actel/tests/testthat/test_migration.R                                          |   32
 actel-1.4.0/actel/tests/testthat/test_migration_helpers.R                                  |   69
 actel-1.4.0/actel/tests/testthat/test_plotArray.R                                          |    2
 actel-1.4.0/actel/tests/testthat/test_plotDot.R                                            |only
 actel-1.4.0/actel/tests/testthat/test_plotLive.R                                           |    5
 actel-1.4.0/actel/tests/testthat/test_plotSensors.R                                        |    2
 actel-1.4.0/actel/tests/testthat/test_plotTimes.R                                          |   16
 actel-1.4.0/actel/tests/testthat/test_preload.R                                            |  552 +
 actel-1.4.0/actel/tests/testthat/test_print_extremes.R                                     |   12
 actel-1.4.0/actel/tests/testthat/test_residency.R                                          |   34
 actel-1.4.0/actel/tests/testthat/test_residency_helpers.R                                  |   21
 actel-1.4.0/actel/tests/testthat/test_sectionMovements.R                                   |   10
 actel-1.4.0/actel/tests/testthat/test_transformSpatial.R                                   |   23
 actel-1.4.0/actel/vignettes/actel-website.Rmd                                              |    2
 142 files changed, 9708 insertions(+), 5254 deletions(-)

More information about actel at CRAN