Analyzing <i>in situ</i> gene expression in the mouse brain with image registration, feature extraction and block clustering.

David Kulp University of Massachusetts Amherst, USA http://www.cs.umass.edu/~dkulp/ https://scholar.google.com/citations?user=BUnlF_IAAAAJ https://orcid.org/0000-0001-6540-0222

Manjunatha Jagalur Chris Pal Erik G. Learned-Miller R. Thomas Zoeller David Kulp Analyzing <i>in situ</i> gene expression in the mouse brain with image registration, feature extraction and block clustering. 2007 8 BMC Bioinform. S-10 https://doi.org/10.1186/1471-2105-8-S10-S5 https://www.wikidata.org/entity/Q30841029 db/journals/bmcbi/bmcbi8S.html#JagalurPLZK07

Charles W. Sugnet Karpagam Srinivasan Tyson Clark Georgeann O'Brien Melissa S. Cline Hui Wang 0007 Alan Williams David Kulp John Blume David Haussler Manuel Ares Unusual Intron Conservation near Tissue-Regulated Exons Found by Splicing Microarrays. 2006 2 PLoS Comput. Biol. 1 https://doi.org/10.1371/journal.pcbi.0020004 https://www.wikidata.org/entity/Q25255747 db/journals/ploscb/ploscb2.html#SugnetSCOCWWKBHA06

Xiaojun Di Hajime Matsuzaki Teresa A. Webster Earl Hubbell Guoying Liu Shoulian Dong Dan Bartell Jing Huang 0024 Richard Chiles Geoffrey Yang Mei-mei Shen David Kulp Giulia C. Kennedy Rui Mei Keith W. Jones Simon Cawley Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays. 1958-1963 2005 21 Bioinform. 9 https://doi.org/10.1093/bioinformatics/bti275 https://www.wikidata.org/entity/Q48502928 db/journals/bioinformatics/bioinformatics21.html#DiMWHLDBHCYSKKMJC05

Yiping Zhan David Kulp Model-P: a basecalling method for resequencing microarrays of diploid samples. 189 2005 conf/eccb/2005 ECCB/JBI https://doi.org/10.1093/bioinformatics/bti1129 https://www.wikidata.org/entity/Q48472269 db/conf/eccb/eccb2005.html#ZhanK05 David Kulp Manjunatha Jagalur Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes. 95-106 2005 conf/recomb/2005sbrg Systems Biology and Regulatory Genomics https://doi.org/10.1007/978-3-540-48540-7_9 db/conf/recomb/sbrg2005.html#KulpJ05 Melissa S. Cline Ron Shigeta Raymond Wheeler Michael A. Siani-Rose David Kulp Ann E. Loraine The Effects of Alternative Splicing on Transmembrane Proteins in the Mouse Genome. 17-28 2004 conf/psb/2004 Pacific Symposium on Biocomputing http://psb.stanford.edu/psb-online/proceedings/psb04/cline.pdf db/conf/psb/psb2004.html#ClineSWSKL04

Wei-Min Liu Xiaojun Di Geoffrey Yang Hajime Matsuzaki Jing Huang 0024 Rui Mei Thomas B. Ryder Teresa A. Webster Shoulian Dong Guoying Liu Keith W. Jones Giulia C. Kennedy David Kulp Algorithms for large-scale genotyping microarrays. 2397-2403 2003 19 Bioinform. 18 db/journals/bioinformatics/bioinformatics19.html#LiuDYMHMRWDLJKK03 https://doi.org/10.1093/bioinformatics/btg332 https://www.wikidata.org/entity/Q47328169

Guoying Liu Ann E. Loraine Ron Shigeta Melissa S. Cline Jill Cheng Venu Valmeekam Shaw Sun David Kulp Michael A. Siani-Rose NetAffx: Affymetrix probesets and annotations. 82-86 2003 31 Nucleic Acids Res. 1 db/journals/nar/nar31.html#LiuLSCCVSKS03 https://doi.org/10.1093/nar/gkg121 https://www.wikidata.org/entity/Q30722220

Hui Wang 0007 Earl Hubbell Jing-Shan Hu Gangwu Mei Melissa S. Cline Gang Lu Tyson Clark Michael A. Siani-Rose Manuel Ares David Kulp David Haussler Gene structure-based splice variant deconvolution using a microarry platform. 315-322 2003 conf/ismb/2003 ISMB (Supplement of Bioinformatics) https://doi.org/10.1093/bioinformatics/btg1044 db/conf/ismb/ismb2003.html#WangHHMCLCSAKH03 Melissa S. Cline Guoying Liu Ann E. Loraine Ron Shigeta Jill Cheng Gangwu Mei David Kulp Michael A. Siani-Rose Structure-Based Comparison of Four Eukaryotic Genomes. 127-138 2002 conf/psb/2002 Pacific Symposium on Biocomputing http://psb.stanford.edu/psb-online/proceedings/psb02/cline.pdf db/conf/psb/psb2002.html#ClineLLSCMKS02 Guoying Liu Ann E. Loraine Ron Shigeta Melissa S. Cline Jill Cheng Stephen A. Chervitz David Kulp Michael A. Siani-Rose NetAffx: affymetrix probeset annotations. 147-150 2002 conf/sac/2002 SAC https://doi.org/10.1145/508791.508822 db/conf/sac/sac2002.html#LiuLSCCCKS02

Martin G. Reese Frank H. Eeckman David Kulp David Haussler Improved Splice Site Detection in Genie. 311-323 1997 4 J. Comput. Biol. 3 db/journals/jcb/jcb4.html#ReeseEKH97 https://doi.org/10.1089/cmb.1997.4.311 https://www.wikidata.org/entity/Q46338894

Martin G. Reese Frank H. Eeckman David Kulp David Haussler Improved splice site detection in Genie. 232-240 1997 conf/recomb/1997 RECOMB https://doi.org/10.1145/267521.267766 db/conf/recomb/recomb1997.html#ReeseEKH97 David Kulp David Haussler Martin G. Reese Frank H. Eeckman A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA. 134-142 1996 conf/ismb/1996 ISMB db/conf/ismb/ismb1996.html#KulpHRE96 http://www.aaai.org/Library/ISMB/1996/ismb96-015.php

Timothy C. Bell David Kulp Longest-match String Searching for Ziv-Lempel Compression. 757-771 1993 23 Softw. Pract. Exp. 7 db/journals/spe/spe23.html#BellK93 https://doi.org/10.1002/spe.4380230705

Manuel Ares Dan Bartell Timothy C. Bell John Blume Simon Cawley Jill Cheng Stephen A. Chervitz Richard Chiles Tyson Clark Melissa S. Cline Xiaojun Di Shoulian Dong Frank H. Eeckman David Haussler Jing-Shan Hu Jing Huang 0024 Earl Hubbell Manjunatha Jagalur Keith W. Jones Giulia C. Kennedy Erik G. Learned-Miller Guoying Liu Weimin LiuWei-Min Liu Ann E. Loraine Gang Lu Hajime Matsuzaki Gangwu Mei Rui Mei Georgeann O'Brien Christopher Joseph PalChris Pal Martin G. Reese Thomas B. Ryder Mei-mei Shen Ron Shigeta Michael A. Siani-Rose Karpagam Srinivasan Charles W. Sugnet Shaw Sun Venu Valmeekam Hui Wang 0007 Teresa A. Webster Raymond Wheeler Alan Williams Geoffrey Yang Yiping Zhan R. Thomas Zoeller