LLM experimentation through knowledge graphs: Towards improved management, repeatability, and verification.

Jamie P. McCusker Rensselaer Polytechnic Institute (RPI), Tetherless World Constellation, Troy, NY, USA Yale University, New Haven, CT, USA https://tw.rpi.edu//web/person/JamieMcCusker https://mathgenealogy.org/id.php?id=198655 https://www.linkedin.com/in/jpmccu https://orcid.org/0000-0003-1085-6059 https://www.wikidata.org/entity/Q57025992

John S. Erickson Henrique Santos 0002 Vládia Pinheiro Jamie P. McCusker Deborah L. McGuinness LLM experimentation through knowledge graphs: Towards improved management, repeatability, and verification. 100853 2025 85 J. Web Semant. https://doi.org/10.1016/j.websem.2024.100853 db/journals/ws/ws85.html#EricksonSPMM25 streams/journals/ws

John S. Erickson Henrique Santos 0002 Jamie P. McCusker Sola Shirai Deborah L. McGuinness James A. Hendler ChatBS: An Exploratory Sandbox for Bridging Large Language Models with the Open Web. 2024 ISWC (Posters/Demos/Industry) https://ceur-ws.org/Vol-3828/paper40.pdf conf/semweb/2024p db/conf/semweb/iswc2024p.html#Erickson0MSMH24 Jamie P. McCusker Henrique Santos 0002 Rishi Singh Sabbir M. Rashid Abraham Sanders Grace Roessling Hongji Guo Bashirul Azam Biswas Deborah L. McGuinness Tomek Strzalkowski Qiang Ji Jay Miller ARCLIGHT: Automated Clustering and Curriculum Learning Guided by Human Training. 2024 HGAIS@ISWC https://ceur-ws.org/Vol-3953/366.pdf conf/semweb/2024hgais db/conf/semweb/hgais2024.html#McCuskerSSRSRGB24 Sabbir M. Rashid John S. Erickson Jamie P. McCusker Henrique Santos 0002 Paulo Pinheiro 0001 Shruthi Chari Matthew Johnson Jade S. Franklin Kelsey Rook Deborah L. McGuinness Supporting Next-Generation Science with a Semantic Ecosystem. 2024 ISWC (Posters/Demos/Industry) https://ceur-ws.org/Vol-3828/paper13.pdf conf/semweb/2024p db/conf/semweb/iswc2024p.html#RashidEM00CJFRM24 Jamie P. McCusker Customizable Knowledge Graph Visualization using the Whyis Knowledge Explorer. 24-34 2024 VOILA@ISWC https://ceur-ws.org/Vol-3773/paper2.pdf conf/voila/2024 db/conf/voila/voila2024.html#McCusker24

Oshani Seneviratne Amar K. Das Shruthi Chari Nkechinyere N. Agu Sabbir M. Rashid Jamie P. McCusker Jade S. Franklin Miao Qi Kristin P. Bennett Ching-Hua Chen James A. Hendler Deborah L. McGuinness Semantically enabling clinical decision support recommendations. 8 2023 December 14 J. Biomed. Semant. 1 https://doi.org/10.1186/s13326-023-00285-9 db/journals/biomedsem/biomedsem14.html#SeneviratneDCARMFQBCHM23

Henrique Santos 0002 Paulo Pinheiro 0001 Jamie P. McCusker Sabbir M. Rashid Deborah L. McGuinness SciKG: Tutorial on Building Scientific Knowledge Graphs from Data, Data Dictionaries, and Codebooks. 2023 ESWC Workshops https://ceur-ws.org/Vol-3443/ESWC_2023_scikg.pdf conf/esws/2023w db/conf/esws/eswc2023w.html#00020MRM23 Sabbir M. Rashid Jamie P. McCusker Daniel M. Gruen Oshani Seneviratne Deborah L. McGuinness A Concise Ontology to Support Research on Complex, Multimodal Clinical Reasoning. 390-407 2023 ESWC https://doi.org/10.1007/978-3-031-33455-9_23 https://www.wikidata.org/entity/Q118893911 conf/esws/2023 db/conf/esws/eswc2023.html#RashidMGSM23 Jamie P. McCusker Deborah L. McGuinness Whyis 2: An Open Source Framework for Knowledge Graph Development and Research. 538-554 2023 ESWC https://doi.org/10.1007/978-3-031-33455-9_32 https://www.wikidata.org/entity/Q118894429 conf/esws/2023 db/conf/esws/eswc2023.html#McCuskerM23 Jade S. Franklin Hannah Powers John S. Erickson Jamie P. McCusker Deborah L. McGuinness Kristin P. Bennett An Ontology for Reasoning About Fairness in Regression and Machine Learning. 243-261 2023 KGSWC https://doi.org/10.1007/978-3-031-47745-4_18 conf/kgswc/2023 db/conf/kgswc/kgswc2023.html#FranklinPEMMB23 Catia Pesquita Ernesto Jiménez-Ruiz Jamie P. McCusker Daniel Faria Mauro Dragoni Anastasia Dimou Raphaël Troncy Sven Hertling The Semantic Web - 20th International Conference, ESWC 2023, Hersonissos, Crete, Greece, May 28 - June 1, 2023, Proceedings ESWC Springer 2023 Lecture Notes in Computer Science 13870 978-3-031-33454-2 978-3-031-33455-9 https://doi.org/10.1007/978-3-031-33455-9 https://www.wikidata.org/entity/Q118792819 db/conf/esws/eswc2023.html

Jamie P. McCusker LOKE: Linked Open Knowledge Extraction for Automated Knowledge Graph Construction. 2023 abs/2311.09366 CoRR https://doi.org/10.48550/arXiv.2311.09366 https://www.wikidata.org/entity/Q123505759 db/journals/corr/corr2311.html#abs-2311-09366

Ibrahim Abdelaziz Julian Dolby Jamie P. McCusker Kavitha Srinivas Can Machines Read Coding Manuals Yet? - A Benchmark for Building Better Language Models for Code Understanding. 4415-4423 2022 AAAI https://doi.org/10.1609/aaai.v36i4.20363 https://www.wikidata.org/entity/Q114050401 conf/aaai/2022 db/conf/aaai/aaai2022.html#AbdelazizDMS22 Jade S. Franklin Karan Bhanot Mohamed F. Ghalwash Kristin P. Bennett Jamie P. McCusker Deborah L. McGuinness An Ontology for Fairness Metrics. 265-275 2022 AIES https://doi.org/10.1145/3514094.3534137 https://www.wikidata.org/entity/Q130925161 conf/aies/2022 db/conf/aies/aies2022.html#FranklinBGBMM22 Ibrahim Abdelaziz Julian Dolby Jamie P. McCusker Kavitha Srinivas A Toolkit for Generating Code Knowledge Graphs. 137-144 2021 K-CAP https://doi.org/10.1145/3460210.3493578 https://www.wikidata.org/entity/Q130857477 conf/kcap/2021 db/conf/kcap/kcap2021.html#AbdelazizDMS21 Jamie P. McCusker Michael Deagen Tolulomo Fateye Anya Wallace Sabbir M. Rashid Deborah L. McGuinness Creating and Visualizing the Materials Science Knowledge Graph with Whyis. 2021 ISWC (Posters/Demos/Industry) https://ceur-ws.org/Vol-2980/paper402.pdf conf/semweb/2021p db/conf/semweb/iswc2021p.html#McCuskerDFWRM21

Henrique Santos 0002 Jamie P. McCusker Deborah L. McGuinness Geospatial Reasoning with Shapefiles for Supporting Policy Decisions. 2021 abs/2106.04771 CoRR https://arxiv.org/abs/2106.04771 db/journals/corr/corr2106.html#abs-2106-04771

Jay D. S. Franklin Shruthi Chari Morgan Foreman Oshani Seneviratne Daniel M. Gruen Jamie P. McCusker Amar K. Das Deborah L. McGuinness Knowledge Extraction of Cohort Characteristics in Research Publications. 2020 AMIA https://knowledge.amia.org/72332-amia-1.4602255/t003-1.4606204/t003-1.4606205/3417089-1.4606515/3413599-1.4606512 conf/amia/2020 db/conf/amia/amia2020.html#FranklinCFSGMDM20 Jamie P. McCusker Neha Keshan Sabbir M. Rashid Michael Deagen L. Catherine Brinson Deborah L. McGuinness NanoMine: A Knowledge Graph for Nanocomposite Materials Science. 144-159 2020 ISWC (2) https://doi.org/10.1007/978-3-030-62466-8_10 https://www.wikidata.org/entity/Q101086219 conf/semweb/2020-2 db/conf/semweb/iswc2020-2.html#McCuskerKRDBM20 Henrique Santos 0002 Alice Mulvehill John S. Erickson Jamie P. McCusker Minor Gordon Owen Xie Samuel Stouffer Gerard Capraro Alex Pidwerbetsky John Burgess Allan Berlinsky Kurt A. Turck Jonathan D. Ashdown Deborah L. McGuinness The Dynamic Spectrum Access Policy Framework in Action. 218-223 2020 ISWC (Demos/Industry) https://ceur-ws.org/Vol-2721/paper555.pdf conf/semweb/2020demo db/conf/semweb/demo2020.html#SantosMEMGXSCPB20a Ibrahim Abdelaziz Kavitha Srinivas Julian Dolby Jamie P. McCusker A Demonstration of CodeBreaker: A Machine Interpretable Knowledge Graph for Code. 266-271 2020 ISWC (Demos/Industry) https://ceur-ws.org/Vol-2721/paper568.pdf conf/semweb/2020demo db/conf/semweb/demo2020.html#AbdelazizSDM20 Henrique Santos 0002 Alice Mulvehill John S. Erickson Jamie P. McCusker Minor Gordon Owen Xie Samuel Stouffer Gerard Capraro Alex Pidwerbetsky John Burgess Allan Berlinsky Kurt A. Turck Jonathan D. Ashdown Deborah L. McGuinness A Semantic Framework for Enabling Radio Spectrum Policy Management and Evaluation. 482-498 2020 ISWC (2) https://doi.org/10.1007/978-3-030-62466-8_30 https://www.wikidata.org/entity/Q101086238 conf/semweb/2020-2 db/conf/semweb/iswc2020-2.html#SantosMEMGXSCPB20

Kavitha Srinivas Ibrahim Abdelaziz Julian Dolby Jamie P. McCusker Graph4Code: A Machine Interpretable Knowledge Graph for Code. 2020 abs/2002.09440 CoRR https://arxiv.org/abs/2002.09440 db/journals/corr/corr2002.html#abs-2002-09440

Henrique Santos 0002 Alice Mulvehill John S. Erickson Jamie P. McCusker Minor Gordon Owen Xie Samuel Stouffer Gerard Capraro Alex Pidwerbetsky John Burgess Allan Berlinsky Kurt A. Turck Jonathan D. Ashdown Deborah L. McGuinness A Semantic Framework for Enabling Radio Spectrum Policy Management and Evaluation. 2020 abs/2011.04085 CoRR https://arxiv.org/abs/2011.04085 db/journals/corr/corr2011.html#abs-2011-04085

Shruthi Chari Miao Qi Nkechinyere N. Agu Oshani Seneviratne Jamie P. McCusker Kristin P. Bennett Amar K. Das Deborah L. McGuinness Making Study Populations Visible Through Knowledge Graphs. 53-68 2019 ISWC (2) https://doi.org/10.1007/978-3-030-30796-7_4 https://www.wikidata.org/entity/Q125455958 conf/semweb/2019-2 db/conf/semweb/iswc2019-2.html#ChariQASMBDM19a Nkechinyere N. Agu Neha Keshan Shruthi Chari Oshani Seneviratne Jamie P. McCusker Deborah L. McGuinness G-PROV: Provenance Management for Clinical Practice Guidelines. 68-75 2019 SeWeBMeDa@ISWC https://ceur-ws.org/Vol-2477/paper_6.pdf conf/semweb/2019sewebmeda db/conf/semweb/sewebmeda2019.html#AguKCSMM19 Shruthi Chari Miao Qi Nkechinyere N. Agu Oshani Seneviratne Jamie P. McCusker Kristin P. Bennett Amar K. Das Deborah L. McGuinness Ontology-enabled Analysis of Study Populations. 117-120 2019 ISWC (Satellites) https://ceur-ws.org/Vol-2456/paper30.pdf conf/semweb/2019p db/conf/semweb/iswc2019p.html#ChariQASMBDM19 Jamie P. McCusker Michel Dumontier Shruthi Chari Joanne S. Luciano Deborah L. McGuinness A Linked Data Representation for Summary Statistics and Grouping Criteria. 2019 SAWSemStats@ISWC https://ceur-ws.org/Vol-2549/article-04.pdf conf/semweb/2019sawsemstats db/conf/semweb/sawsemstats2019.html#McCuskerDCLM19 Jamie P. McCusker Michel Dumontier Rui Yan 0007 Sylvia He Jonathan S. Dordick Deborah L. McGuinness Reflections on: Finding Melanoma Drugs Through a Probabilistic Knowledge Graph. 2019 JT@ISWC https://ceur-ws.org/Vol-2576/paper07.pdf conf/semweb/2019jt db/conf/semweb/jt2019.html#McCuskerDYHDM19 Alexander New Miao Qi Shruthi Chari Sabbir M. Rashid Oshani Seneviratne Jamie P. McCusker John S. Erickson Deborah L. McGuinness Kristin P. Bennett Automating Population Health Studies Through Semantics and Statistics. 2019 SAWSemStats@ISWC https://ceur-ws.org/Vol-2549/article-05.pdf conf/semweb/2019sawsemstats db/conf/semweb/sawsemstats2019.html#NewQCRSMEMB19 Oshani Seneviratne Amar K. Das Shruthi Chari Nkechinyere N. Agu Sabbir M. Rashid Ching-Hua Chen Jamie P. McCusker James A. Hendler Deborah L. McGuinness Enabling Trust in Clinical Decision Support Recommendations through Semantics. 55-67 2019 SeWeBMeDa@ISWC https://ceur-ws.org/Vol-2477/paper_5.pdf conf/semweb/2019sewebmeda db/conf/semweb/sewebmeda2019.html#SeneviratneDCAR19

Shruthi Chari Miao Qi Nkechinyere N. Agu Oshani Seneviratne Jamie P. McCusker Kristin P. Bennett Amar K. Das Deborah L. McGuinness Making Study Populations Visible through Knowledge Graphs. 2019 abs/1907.04358 CoRR http://arxiv.org/abs/1907.04358 db/journals/corr/corr1907.html#abs-1907-04358

Paulo Pinheiro 0001 Marcello Peixoto Bax Henrique Santos 0002 Sabbir M. Rashid Zhicheng Liang Yue Liu Yarden Ne'eman Jamie P. McCusker Deborah L. McGuinness Annotating Diverse Scientific Data With HAScO. 80-91 2018 ONTOBRAS https://ceur-ws.org/Vol-2228/paper4.pdf conf/ontobras/2018 db/conf/ontobras/ontobras2018.html#PinheiroB0RLLNM18 Jamie P. McCusker Sabbir M. Rashid Nkechinyere Agu Kristin P. Bennett Deborah L. McGuinness Developing Scientific Knowledge Graphs Using Whyis. 52-58 2018 SemSci@ISWC https://ceur-ws.org/Vol-2184/paper-06.pdf conf/semweb/2018semsci db/conf/semweb/semsci2018.html#McCuskerRABM18 Jamie P. McCusker Sabbir M. Rashid Nkechinyere Agu Kristin P. Bennett Deborah L. McGuinness The Whyis Knowledge Graph Framework in Action. 2018 ISWC (P&D/Industry/BlueSky) https://ceur-ws.org/Vol-2180/paper-40.pdf conf/semweb/2018p db/conf/semweb/iswc2018p.html#McCuskerRABM18a Oshani Seneviratne Sabbir M. Rashid Shruthi Chari Jamie P. McCusker Kristin P. Bennett James A. Hendler Deborah L. McGuinness Knowledge Integration for Disease Characterization: A Breast Cancer Example. 223-238 2018 ISWC (2) https://doi.org/10.1007/978-3-030-00668-6_14 https://www.wikidata.org/entity/Q125456515 conf/semweb/2018-2 db/conf/semweb/iswc2018-2.html#SeneviratneRCMB18 Oshani Seneviratne Sabbir M. Rashid Shruthi Chari Jamie P. McCusker Kristin P. Bennett Jim Hendler Deborah L. McGuinness Ontology-enabled Breast Cancer Characterization. 2018 ISWC (P&D/Industry/BlueSky) https://ceur-ws.org/Vol-2180/paper-59.pdf conf/semweb/2018p db/conf/semweb/iswc2018p.html#SeneviratneRCMB18a

Oshani Seneviratne Sabbir M. Rashid Shruthi Chari Jamie P. McCusker Kristin P. Bennett James A. Hendler Deborah L. McGuinness Knowledge Integration for Disease Characterization: A Breast Cancer Example. 2018 abs/1807.07991 CoRR http://arxiv.org/abs/1807.07991 db/journals/corr/corr1807.html#abs-1807-07991

Jamie P. McCusker Michel Dumontier Rui Yan 0007 Sylvia He Jonathan S. Dordick Deborah L. McGuinness Finding melanoma drugs through a probabilistic knowledge graph. e106 2017 3 PeerJ Comput. Sci. https://doi.org/10.7717/peerj-cs.106 https://www.wikidata.org/entity/Q56160871 db/journals/peerj-cs/peerj-cs3.html#McCuskerDYHDM17

Sabbir M. Rashid Katherine Chastain Jeanette A. Stingone Deborah L. McGuinness Jamie P. McCusker The Semantic Data Dictionary Approach to Data Annotation & Integration. 47-54 2017 SemSci@ISWC https://ceur-ws.org/Vol-1931/paper-07.pdf conf/semweb/2017semsci db/conf/semweb/semsci2017.html#RashidCSMM17 Jamie P. McCusker Sabbir M. Rashid Zhicheng Liang Yue Liu Katherine Chastain Paulo Pinheiro 0001 Jeanette A. Stingone Deborah L. McGuinness Broad, Interdisciplinary Science <i>In Tela</i>: An Exposure and Child Health Ontology. 349-357 2017 WebSci https://doi.org/10.1145/3091478.3091497 conf/websci/2017 db/conf/websci/websci2017.html#McCuskerRLLCPSM17 Vipula Rawte Jamie P. McCusker He Zhao L. Catherine Brinson Wei Chen 0041 Linda Schadler Deborah L. McGuinness An Ontology for a Polymer Nanocomposite Community Data Resource. 411-412 2017 WebSci https://doi.org/10.1145/3091478.3098866 conf/websci/2017 db/conf/websci/websci2017.html#RawteMZBCSM17

Jamie P. McCusker Michel Dumontier Rui Yan 0007 Sylvia He Jonathan S. Dordick Deborah L. McGuinness Finding melanoma drugs through a probabilistic knowledge graph. e2007 2016 4 PeerJ Prepr. https://doi.org/10.7287/peerj.preprints.2007v1 db/journals/peerjpre/peerjpre4.html#McCuskerDYHDM16

Ruth E. Duerr Jamie P. McCusker Mark A. Parsons Siri Jodha Singh Khalsa Peter L. Pulsifer Cassidy Thompson Rui Yan 0007 Deborah L. McGuinness Peter Fox 0001 Formalizing the semantics of sea ice. 51-62 2015 8 Earth Sci. Informatics 1 https://doi.org/10.1007/s12145-014-0177-z https://www.wikidata.org/entity/Q63738843 db/journals/esi/esi8.html#DuerrMPKPTYMF15

Michel Dumontier Christopher J. O. Baker Joachim Baran Alison Callahan Leonid L. Chepelev Jose Cruz-Toledo Nicholas R. Del Rio Geraint Duck Laura Inés Furlong Nichealla Keath Dana Klassen Jamie P. McCusker Núria Queralt-Rosinach Matthias Samwald Natalia Villanueva-Rosales Mark D. Wilkinson Robert Hoehndorf The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. 14 2014 5 J. Biomed. Semant. https://doi.org/10.1186/2041-1480-5-14 https://www.wikidata.org/entity/Q19671659 db/journals/biomedsem/biomedsem5.html#DumontierBBCCCRDFKKMQSVWH14

Jamie P. McCusker Rui Yan 0007 Kusum Solanki John S. Erickson Cynthia Chang Michel Dumontier Jonathan S. Dordick Deborah L. McGuinness A Nanopublication Framework for Biological Networks using Cytoscape.js. 90-92 2014 ICBO https://ceur-ws.org/Vol-1327/icbo2014_paper_57.pdf conf/icbo/2014 db/conf/icbo/icbo2014.html#McCuskerYSECDDM14 John S. Erickson Katherine Chastain Zachary Fry Jamie P. McCusker Rui Yan 0007 Evan W. Patton Deborah L. McGuinness Identifying First Responder Communities Using Social Network Analysis. 425-428 2014 ISWC (Posters & Demos) https://ceur-ws.org/Vol-1272/paper_132.pdf conf/semweb/2014p db/conf/semweb/iswc2014p.html#EricksonCFMYPM14 Jamie P. McCusker Timothy Lebo Michael Krauthammer Deborah L. McGuinness Next Generation Cancer Data Discovery, Access, and Integration Using Prizms and Nanopublications. 105-112 2013 DILS https://doi.org/10.1007/978-3-642-39437-9_9 https://www.wikidata.org/entity/Q28595912 conf/dils/2013 db/conf/dils/dils2013.html#McCuskerLKM13 Jamie P. McCusker Deborah L. McGuinness Jeongmin Lee 0001 Chavon Thomas Paul Courtney Zaria Tatalovich Noshir S. Contractor Glen D. Morgan Abdul R. Shaikh Towards Next Generation Health Data Exploration: A Data Cube-Based Investigation into Population Statistics for Tobacco. 2725-2732 2013 HICSS https://doi.org/10.1109/HICSS.2013.567 https://doi.ieeecomputersociety.org/10.1109/HICSS.2013.567 https://www.wikidata.org/entity/Q58609288 conf/hicss/2013 db/conf/hicss/hicss2013.html#McCuskerMLTCTCMS13 A. Patrice Seyed Timothy Lebo Evan W. Patton Jamie P. McCusker Deborah L. McGuinness SemantEco: a next-generation web observatory. 1369-1372 2013 WWW (Companion Volume) https://doi.org/10.1145/2487788.2488176 conf/www/2013c db/conf/www/www2013c.html#SeyedLPMM13

Matthew Holford Jamie P. McCusker Kei-Hoi Cheung Michael Krauthammer A semantic web framework to integrate cancer omics data with biological knowledge. S10 2012 13 BMC Bioinform. S-1 https://doi.org/10.1186/1471-2105-13-S1-S10 https://www.wikidata.org/entity/Q34176647 db/journals/bmcbi/bmcbi13S.html#HolfordMCK12

Jamie P. McCusker Timothy Lebo Cynthia Chang Deborah L. McGuinness Paulo Pinheiro da Silva Parallel Identities for Managing Open Government Data. 55-62 2012 27 IEEE Intell. Syst. 3 https://doi.org/10.1109/MIS.2012.5 http://doi.ieeecomputersociety.org/10.1109/MIS.2012.5 https://www.wikidata.org/entity/Q62044538 db/journals/expert/expert27.html#McCuskerLCMS12

Helena F. Deus Eric Prud'hommeaux Michael Miller 0001 Jun Zhao 0003 James Malone Tomasz Adamusiak Jamie P. McCusker Sudeshna Das 0001 Philippe Rocca-Serra Ronan Fox M. Scott Marshall Translating standards into practice - One Semantic Web API for Gene Expression. 782-794 2012 45 J. Biomed. Informatics 4 https://doi.org/10.1016/j.jbi.2012.03.002 https://www.wikidata.org/entity/Q38424910 db/journals/jbi/jbi45.html#DeusPMZMAMDRFM12

Deborah L. McGuinness Timothy Lebo Li Ding 0001 Jamie P. McCusker Abdul R. Shaikh Richard P. Moser Glen D. Morgan Zaria Tatalovich Gordon Willis Bradford W. Hesse Noshir S. Contractor Paul Courtney Towards Semantically Enabled Next Generation Community Health Information Portals: The PopSciGrid Pilot. 2752-2760 2012 HICSS https://doi.org/10.1109/HICSS.2012.605 https://doi.ieeecomputersociety.org/10.1109/HICSS.2012.605 https://www.wikidata.org/entity/Q57410298 conf/hicss/2012 db/conf/hicss/hicss2012.html#McGuinnessLDMSMMTWHCC12 Jamie P. McCusker Timothy Lebo Alvaro Graves Dominic DiFranzo Paulo Pinheiro 0001 Deborah L. McGuinness Functional Requirements for Information Resource Provenance on the Web. 52-66 2012 IPAW https://doi.org/10.1007/978-3-642-34222-6_5 https://www.wikidata.org/entity/Q62044535 conf/ipaw/2012 db/conf/ipaw/ipaw2012.html#McCuskerLGDPM12 Jamie P. McCusker Jeongmin Lee 0001 Chavon Thomas Deborah L. McGuinness Public Health Surveillance Using Global Health Explorer. 2012 SATBI+SWIM https://ceur-ws.org/Vol-930/p1.pdf conf/semweb/2012satbi db/conf/semweb/satbi2012.html#McCuskerLTM12

Joanne S. Luciano Bosse Andersson Colin R. Batchelor Olivier Bodenreider Tim Clark Christine K. Denney Christopher Domarew Thomas Gambet Lee Harland Anja Jentzsch Vipul Kashyap Peter J. Kos Julia Kozlovsky Timothy Lebo M. Scott Marshall Jamie P. McCusker Deborah L. McGuinness Chimezie Ogbuji Elgar Pichler Robert L. Powers Eric Prud'hommeaux Matthias Samwald Lynn M. Schriml Peter J. Tonellato Patricia L. Whetzel Jun Zhao 0003 Susie Stephens Michel Dumontier The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. S1 2011 2 J. Biomed. Semant. S-2 http://www.jbiomedsem.com/content/2/S2/S1 db/journals/biomedsem/biomedsem2S.html#LucianoABBCDDGHJKKKLMMMOPPPSSTWZSD11

Li Ding 0001 James Michaelis Jamie P. McCusker Deborah L. McGuinness Linked provenance data: A semantic Web-based approach to interoperable workflow traces. 797-805 2011 27 Future Gener. Comput. Syst. 6 https://doi.org/10.1016/j.future.2010.10.011 db/journals/fgcs/fgcs27.html#DingMMM11

Jamie P. McCusker Joanne S. Luciano Deborah L. McGuinness Towards an Ontology for Conceptual Modeling. 2011 ICBO https://ceur-ws.org/Vol-833/paper25.pdf conf/icbo/2011 db/conf/icbo/icbo2011.html#McCuskerLM11 Jamie P. McCusker Timothy Lebo Li Ding 0001 Cynthia Chang Paulo Pinheiro da Silva Deborah L. McGuinness Where did you hear that? Information and the Sources They Come From. 2011 LISC https://ceur-ws.org/Vol-783/paper4.pdf conf/semweb/2011lisc db/conf/semweb/lisc2011.html#McCuskerLDCSM11 Helena F. Deus Jun Zhao 0003 Jamie P. McCusker Ronan Fox Eric Prud'hommeaux James Malone Sudeshna Das 0001 Michael Miller 0001 Tomasz Adamusiak Philippe Rocca-Serra M. Scott Marshall Translating standards into practice: one semantic web API for gene expression. 6-7 2011 SWAT4LS https://doi.org/10.1145/2166896.2166900 https://www.wikidata.org/entity/Q130908480 conf/swat4ls/2011 db/conf/swat4ls/swat4ls2011.html#DeusZMFPMDMARM11 Jamie P. McCusker Deborah L. McGuinness Explorations into the Provenance of High Throughput Biomedical Experiments. 120-128 2010 IPAW https://doi.org/10.1007/978-3-642-17819-1_15 conf/ipaw/2010 db/conf/ipaw/ipaw2010.html#McCuskerM10 Jamie P. McCusker Deborah L. McGuinness Towards Identity in Linked Data. 2010 OWLED https://ceur-ws.org/Vol-614/owled2010_submission_12.pdf conf/owled/2010 db/conf/owled/owled2010.html#McCuskerM10 Harry Halpin Patrick J. Hayes Jamie P. McCusker Deborah L. McGuinness Henry S. Thompson When owl: sameAs Isn't the Same: An Analysis of Identity in Linked Data. 305-320 2010 ISWC (1) https://doi.org/10.1007/978-3-642-17746-0_20 https://www.wikidata.org/entity/Q29387104 conf/semweb/2010-1 db/conf/semweb/iswc2010-1.html#HalpinHMMT10 Matthew Holford Jamie P. McCusker Kei-Hoi Cheung Michael Krauthammer Analysis of Cancer Omics Data In A Semantic Web Framework. 2010 SWAT4LS https://ceur-ws.org/Vol-698/paper1.pdf conf/swat4ls/2010 db/conf/swat4ls/swat4ls2010.html#HolfordMCK10

Matthew Holford Jamie P. McCusker Kei-Hoi Cheung Michael Krauthammer Analysis Of Cancer Omics Data In A Semantic Web Framework http://arxiv.org/abs/1012.1648 2010 CoRR abs/1012.1648 db/journals/corr/corr1012.html#abs-1012-1648

Jamie P. McCusker Joshua A. Phillips Alejandra N. González-Beltrán Anthony Finkelstein Michael Krauthammer Semantic web data warehousing for caGrid. 2 2009 10 BMC Bioinform. S-10 https://doi.org/10.1186/1471-2105-10-S10-S2 https://www.wikidata.org/entity/Q28750894 db/journals/bmcbi/bmcbi10S.html#McCuskerPBFK09

Songhua Xu Jamie P. McCusker Michael Krauthammer Yale Image Finder (YIF): a new search engine for retrieving biomedical images. 1968-1970 2008 24 Bioinform. 17 https://doi.org/10.1093/bioinformatics/btn340 https://www.wikidata.org/entity/Q30483867 db/journals/bioinformatics/bioinformatics24.html#XuMK08

Ibrahim Abdelaziz Tomasz Adamusiak Nkechinyere AguNkechinyere N. Agu Bo AnderssonBosse Andersson Jonathan D. Ashdown Christopher J. O. Baker Joachim Baran Colin R. Batchelor Marcello Peixoto Bax Kristin P. Bennett Allan Berlinsky Karan Bhanot Bashirul Azam Biswas Olivier Bodenreider L. Catherine Brinson John Burgess Alison Callahan Gerard Capraro Cynthia Chang Shruthi Chari Katherine Chastain Ching-Hua Chen Wei Chen 0041 Leonid L. Chepelev Kei-Hoi Cheung Tim Clark Noshir S. Contractor Paul Courtney Jose Cruz-Toledo Amar K. Das Sudeshna Das 0001 Michael Deagen Christine K. Denney Helena F. Deus Dominic DiFranzo Anastasia Dimou Li Ding 0001 Julian Dolby Christopher Domarew Jonathan S. Dordick Mauro Dragoni Geraint Duck Ruth E. Duerr Michel Dumontier John S. Erickson Daniel Faria Tolulomo Fateye Anthony Finkelstein Morgan Foreman Peter Fox 0001 Ronan Fox Jade S. Franklin Jay D. S. Franklin Zachary Fry Laura Inés Furlong Thomas Gambet Mohamed F. Ghalwash Alejandra N. González-Beltrán Minor Gordon Alvaro Graves Dan GruenDaniel M. Gruen Hongji Guo Harry Halpin Lee Harland Patrick J. Hayes Sylvia He James A. HendlerJim Hendler Sven Hertling Bradford W. Hesse Robert Hoehndorf Matthew Holford Anja Jentzsch Qiang Ji Ernesto Jiménez-Ruiz Matthew Johnson Vipul Kashyap Nichealla Keath Neha Keshan Siri Jodha S. KhalsaSiri Jodha Singh Khalsa Dana Klassen Peter J. Kos Julia Kozlovsky Michael Krauthammer Timothy Lebo Jeongmin Lee 0001 Zhicheng Liang Yue Liu Joanne S. Luciano James Malone M. Scott Marshall Deborah L. McGuinness James Michaelis Jay Miller Michael Miller 0001 Glen D. Morgan Richard P. Moser Alice M. MulvehillAlice Mulvehill Yarden Ne'eman Alexander New Chimezie Ogbuji Mark A. Parsons Evan W. Patton Catia Pesquita Joshua A. Phillips Elgar Pichler Alex Pidwerbetsky Paulo Pinheiro 0001Paulo Pinheiro da Silva Vládia Pinheiro Hannah Powers Robert L. Powers Eric Prud'hommeaux Peter L. Pulsifer Miao Qi Núria Queralt-Rosinach Sabbir M. Rashid Vipula Rawte Nicholas R. Del Rio Philippe Rocca-Serra Grace Roessling Kelsey Rook Matthias Samwald Abraham Sanders Henrique Santos 0002 Linda Schadler Lynn M. Schriml Oshani Seneviratne A. Patrice Seyed Abdul R. Shaikh Sola S. ShiraiSola Shirai Rishi Singh Kusum Solanki Kavitha Srinivas Susie Stephens Jeanette A. Stingone Samuel Stouffer Tomek Strzalkowski Zaria Tatalovich Chavon Thomas Cassidy Thompson Henry S. Thompson Peter J. Tonellato Raphaël Troncy Kurt A. Turck Natalia Villanueva-Rosales Anya Wallace Patricia L. Whetzel Mark D. Wilkinson Gordon Willis Owen Xie Songhua Xu Rui Yan 0007 He Zhao Jun Zhao 0003