On the impact of discreteness and abstractions on modelling noise in gene regulatory networks.

Maria Luisa Guerriero

Chiara Bodei Luca Bortolussi Davide Chiarugi Maria Luisa Guerriero Alberto Policriti Alessandro Romanel On the impact of discreteness and abstractions on modelling noise in gene regulatory networks. 98-108 2015 56 Comput. Biol. Chem. https://doi.org/10.1016/j.compbiolchem.2015.04.004 https://www.wikidata.org/entity/Q53528430 db/journals/candc/candc56.html#BodeiBCGPR15

Anastasis Georgoulas Maria Luisa Guerriero A Software Interface Between the Narrative Language and Bio-PEPA. 51-65 2012 conf/cs2bio/2012 CS2Bio https://doi.org/10.1016/j.entcs.2013.02.018 https://www.wikidata.org/entity/Q113318008 db/journals/entcs/entcs293.html#GeorgoulasG13 Allan Clark Stephen Gilmore Maria Luisa Guerriero Jane Hillston Conservation of Mass Analysis for Bio-PEPA. 107-126 2012 conf/pasm/2012 PASM/PDMC https://doi.org/10.1016/j.entcs.2013.07.008 https://www.wikidata.org/entity/Q113317985 db/journals/entcs/entcs296.html#ClarkGGH13

Laurence Loewe Maria Luisa Guerriero Steven Watterson Stuart L. Moodie Peter Ghazal Jane Hillston Translation from the Quantified Implicit Process Flow Abstraction in SBGN-PD Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway. 13-38 2011 13 Trans. Comp. Sys. Biology https://doi.org/10.1007/978-3-642-19748-2_2 journals/tcsb/2011-13 db/journals/tcsb/tcsb13.html#LoeweGWMGH11

Paolo Ballarini Maria Luisa Guerriero Query-based verification of qualitative trends and oscillations in biochemical systems. 2019-2036 2010 411 Theor. Comput. Sci. 20 https://doi.org/10.1016/j.tcs.2010.02.010 db/journals/tcs/tcs411.html#BallariniG10

Allan Clark Stephen Gilmore Maria Luisa Guerriero Peter Kemper On verifying Bio-PEPA models. 23-32 2010 CMSB https://doi.org/10.1145/1839764.1839769 conf/cmsb/2010 db/conf/cmsb/cmsb2010.html#ClarkGGK10 Ozgur E. Akman Maria Luisa Guerriero Laurence Loewe Carl Troein Complementary approaches to understanding the plant circadian clock FBTC 2010 1-19 https://doi.org/10.4204/EPTCS.19.1 http://arxiv.org/abs/1002.4661 journals/corr/abs-1002-4919 db/series/eptcs/eptcs19.html#abs-1002-4661 Federica Ciocchetta Maria Luisa Guerriero Jane Hillston Investigating modularity in the analysis of process algebra models of biochemical systems FBTC 2010 55-69 https://doi.org/10.4204/EPTCS.19.4 http://arxiv.org/abs/1002.4063 journals/corr/abs-1002-4919 db/series/eptcs/eptcs19.html#abs-1002-4063

Maria Luisa Guerriero Anna Dudka Nicholas Underhill-Day John K. Heath Corrado Priami Narrative-based computational modelling of the Gp130/JAK/STAT signalling pathway. 40 2009 3 BMC Syst. Biol. https://doi.org/10.1186/1752-0509-3-40 https://www.wikidata.org/entity/Q33430520 db/journals/bmcsb/bmcsb3.html#GuerrieroDUHP09

Maria Luisa Guerriero Qualitative and Quantitative Analysis of a Bio-PEPA Model of the Gp130/JAK/STAT Signalling Pathway. 90-115 2009 11 Trans. Comp. Sys. Biology https://doi.org/10.1007/978-3-642-04186-0_5 journals/tcsb/2009-11 db/journals/tcsb/tcsb11.html#Guerriero09

Maria Luisa Guerriero Davide Prandi Corrado Priami Paola Quaglia Process Calculi Abstractions for Biology. 463-486 2009 Algorithmic Bioprocesses https://doi.org/10.1007/978-3-540-88869-7_23 conf/birthday/2009rozenberg db/conf/birthday/rozenberg2009.html#GuerrieroPPQ09 Ozgur E. Akman Federica Ciocchetta Andrea Degasperi Maria Luisa Guerriero Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the <i>Neurospora crassa</i> Circadian Network. 52-67 2009 CMSB https://doi.org/10.1007/978-3-642-03845-7_4 https://www.wikidata.org/entity/Q57919276 conf/cmsb/2009 db/conf/cmsb/cmsb2009.html#AkmanCDG09 Federica Ciocchetta Adam Duguid Stephen Gilmore Maria Luisa Guerriero Jane Hillston The Bio-PEPA Tool Suite. 309-310 2009 QEST https://doi.org/10.1109/QEST.2009.27 https://doi.ieeecomputersociety.org/10.1109/QEST.2009.27 conf/qest/2009 db/conf/qest/qest2009.html#CiocchettaDGGH09 Adam Duguid Stephen T. Gilmore Maria Luisa Guerriero Jane Hillston Laurence Loewe Design and Development of Software Tools for Bio-PEPA. 956-967 2009 WSC https://doi.org/10.1109/WSC.2009.5429725 http://dl.acm.org/citation.cfm?id=1995593 conf/wsc/2009 db/conf/wsc/wsc2009.html#DuguidGGHL09 Federica Ciocchetta Adam Duguid Maria Luisa Guerriero A compartmental model of the cAMP/PKA/MAPK pathway in Bio-PEPA MeCBIC 2009 71-90 https://doi.org/10.4204/EPTCS.11.5 http://arxiv.org/abs/0911.4984 journals/corr/abs-0912-0034 db/series/eptcs/eptcs11.html#abs-0911-4984 Federica Ciocchetta Stephen Gilmore Maria Luisa Guerriero Jane Hillston Integrated Simulation and Model-Checking for the Analysis of Biochemical Systems. 17-38 2008 conf/pasm/2008 PASM@EPEW https://doi.org/10.1016/j.entcs.2009.02.048 db/journals/entcs/entcs232.html#CiocchettaGGH09 Federica Ciocchetta Maria Luisa Guerriero Modelling Biological Compartments in Bio-PEPA. 77-95 2008 conf/mecbic/2008 MeCBIC https://doi.org/10.1016/j.entcs.2008.12.105 db/journals/entcs/entcs227.html#CiocchettaG09 Maria Luisa Guerriero Corrado Priami Alessandro Romanel Modeling Static Biological Compartments with Beta-binders. 247-261 2007 conf/ab/2007 AB https://doi.org/10.1007/978-3-540-73433-8_18 db/conf/ab/ab2007.html#GuerrieroPR07 Maria Luisa Guerriero John K. Heath Corrado Priami An Automated Translation from a Narrative Language for Biological Modelling into Process Algebra. 136-151 2007 conf/cmsb/2007 CMSB https://doi.org/10.1007/978-3-540-75140-3_10 db/conf/cmsb/cmsb2007.html#GuerrieroHP07 Ozgur E. Akman Paolo Ballarini Chiara Bodei Luca Bortolussi Davide Chiarugi Federica Ciocchetta Allan Clark Andrea Degasperi Anna Dudka Adam Duguid Anastasis Georgoulas Peter Ghazal Stephen GilmoreStephen T. Gilmore John K. Heath Jane Hillston Peter Kemper Laurence Loewe Stuart L. Moodie Alberto Policriti Davide Prandi Corrado Priami Paola Quaglia Alessandro Romanel Carl Troein Nicholas Underhill-Day Steven Watterson