ProAct: quantifying the differential activity of biological processes in tissues, cells, and user-defined contexts.

Esti Yeger Lotem Ben-Gurion University of the Negev, Beer Sheva, Israel https://scholar.google.com/citations?user=pGfLM1gAAAAJ https://zbmath.org/authors/?q=ai:yeger-lotem.esti https://mathgenealogy.org/id.php?id=102964 https://orcid.org/0000-0002-8279-7898 https://www.wikidata.org/entity/Q39383798

Moran Sharon Gil Gruber Chanan M. Argov Miri Volozhinsky Esti Yeger Lotem ProAct: quantifying the differential activity of biological processes in tissues, cells, and user-defined contexts. 478-483 2023 July 51 Nucleic Acids Res. W1 https://doi.org/10.1093/nar/gkad421 db/journals/nar/nar51.html#SharonGAVL23

Moran Sharon Ekaterina Vinogradov Chanan M. Argov Or Lazarescu Yazeed Zoabi Idan Hekselman Esti Yeger Lotem The differential activity of biological processes in tissues and cell subsets can illuminate disease-related processes and cell-type identities. 1584-1592 2022 38 Bioinform. 6 https://doi.org/10.1093/bioinformatics/btab883 db/journals/bioinformatics/bioinformatics38.html#SharonVALZHL22

Omer Basha Chanan M. Argov Raviv Artzy Yazeed Zoabi Idan Hekselman Liad Alfandari Vered Chalifa-Caspi Esti Yeger Lotem Differential network analysis of multiple human tissue interactomes highlights tissue-selective processes and genetic disorder genes. 2821-2828 2020 36 Bioinform. 9 https://doi.org/10.1093/bioinformatics/btaa034 https://www.wikidata.org/entity/Q92794637 db/journals/bioinformatics/bioinformatics36.html#BashaAAZHACL20

Katja Luck Dae-Kyum Kim Luke Lambourne Kerstin Spirohn Bridget E. Begg Wenting Bian Ruth Brignall Tiziana Cafarelli Francisco J. Campos-Laborie Benoît Charloteaux Dong-Sic Choi Atina G. Coté Meaghan Daley Steven Deimling Alice Desbuleux Amélie Dricot Marinella Gebbia Madeleine F. Hardy Nishka Kishore Jennifer J. Knapp István A. Kovács Irma Lemmens Miles W. Mee Joseph C. Mellor Carl Pollis Carles Pons Aaron D. Richardson Sadie Schlabach Bridget Teeking Anupama Yadav Mariana Babor Dawit Balcha Omer Basha Christian Bowman-Colin Suet-Feung Chin Soon-gang Choi Claudia Colabella Georges Coppin Cassandra D'Amata David De Ridder Steffi De Rouck Miquel Duran-Frigola Hanane Ennajdaoui Florian Goebels Liana Goehring Anjali Gopal Ghazal Haddad Elodie Hatchi Mohamed Helmy Yves Jacob Yoseph Kassa Serena Landini Roujia Li Natascha van Lieshout Andrew MacWilliams Dylan Markey Joseph N. Paulson Sudharshan Rangarajan John Rasla Ashyad Rayhan Thomas Rolland Adriana San-Miguel Yun Shen Dayag Sheykhkarimli Gloria M. Sheynkman Eyal Simonovsky Murat Tasan Alexander Tejeda Vincent Tropepe Jean-Claude Twizere Yang Wang 0081 Robert J. Weatheritt Jochen Weile Yu Xia 0002 Xinping Yang Esti Yeger Lotem Quan Zhong Patrick Aloy Gary D. Bader Javier De Las Rivas Suzanne Gaudet Tong Hao Janusz Rak Jan Tavernier David E. Hill Marc Vidal Frederick P. Roth Michael A. Calderwood A reference map of the human binary protein interactome. 402-408 2020 580 Nat. 7803 https://doi.org/10.1038/s41586-020-2188-x https://www.wikidata.org/entity/Q91971850 db/journals/nature/nature580.html#LuckKLSBBBCCCCC20

Eyal Simonovsky Ronen Schuster Esti Yeger Lotem Large-scale analysis of human gene expression variability associates highly variable drug targets with lower drug effectiveness and safety. 3028-3037 2019 35 Bioinform. 17 https://doi.org/10.1093/bioinformatics/btz023 https://www.wikidata.org/entity/Q91071373 db/journals/bioinformatics/bioinformatics35.html#SimonovskySL19

Omer Basha Omry Mauer Eyal Simonovsky Rotem Shpringer Esti Yeger Lotem ResponseNet v.3: revealing signaling and regulatory pathways connecting your proteins and genes across human tissues. W242-W247 2019 47 Nucleic Acids Res. Webserver-Issue https://doi.org/10.1093/nar/gkz421 https://www.wikidata.org/entity/Q92203120 db/journals/nar/nar47.html#BashaMSSL19

Omer Basha Rotem Shpringer Chanan M. Argov Esti Yeger Lotem The DifferentialNet database of differential protein-protein interactions in human tissues. D522-D526 2018 46 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkx981 https://www.wikidata.org/entity/Q47148160 db/journals/nar/nar46.html#BashaSAL18

Ilan Y. Smoly Eugene Lerman Michal Ziv-Ukelson Esti Yeger Lotem MotifNet: a web-server for network motif analysis. 1907-1909 2017 33 Bioinform. 12 https://doi.org/10.1093/bioinformatics/btx056 https://www.wikidata.org/entity/Q30490843 db/journals/bioinformatics/bioinformatics33.html#SmolyLZL17

Omer Basha Ruth Barshir Moran Sharon Eugene Lerman Binyamin F. Kirson Idan Hekselman Esti Yeger Lotem The TissueNet v.2 database: A quantitative view of protein-protein interactions across human tissues. D427-D431 2017 45 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkw1088 https://www.wikidata.org/entity/Q37556825 db/journals/nar/nar45.html#BashaBSLKHL17

Ilan Y. Smoly Netta Shemesh Michal Ziv-Ukelson Anat Ben-Zvi Esti Yeger Lotem An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts. 2017 13 PLoS Comput. Biol. 1 https://doi.org/10.1371/journal.pcbi.1005221 https://www.wikidata.org/entity/Q36263765 db/journals/ploscb/ploscb13.html#SmolySZBL17

Ilan Y. Smoly Amir Carmel Yonat Shemer-Avni Esti Yeger Lotem Michal Ziv-Ukelson Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-viral Infection Patterns. 165-179 2016 23 J. Comput. Biol. 3 https://doi.org/10.1089/cmb.2015.0168 https://www.wikidata.org/entity/Q39939599 db/journals/jcb/jcb23.html#SmolyCSYZ16

Omer Basha Dvir Flom Ruth Barshir Ilan Y. Smoly Shoval Tirman Esti Yeger Lotem MyProteinNet: build up-to-date protein interaction networks for organisms, tissues and user-defined contexts. W258-W263 2015 43 Nucleic Acids Res. Webserver-Issue https://doi.org/10.1093/nar/gkv515 https://www.wikidata.org/entity/Q35810245 db/journals/nar/nar43.html#BashaFBSTL15

Ilan Y. Smoly Amir Carmel Yonat Shemer-Avni Esti Yeger Lotem Michal Ziv-Ukelson Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-Viral Infection Patterns. 53-65 2015 WABI https://doi.org/10.1007/978-3-662-48221-6_4 conf/wabi/2015 db/conf/wabi/wabi2015.html#SmolyCSLZ15

Ruth Barshir Omer Shwartz Ilan Y. Smoly Esti Yeger Lotem Comparative Analysis of Human Tissue Interactomes Reveals Factors Leading to Tissue-Specific Manifestation of Hereditary Diseases. 2014 10 PLoS Comput. Biol. 6 https://doi.org/10.1371/journal.pcbi.1003632 https://www.wikidata.org/entity/Q35186314 db/journals/ploscb/ploscb10.html#BarshirSSL14

Alexander Lan Michal Ziv-Ukelson Esti Yeger Lotem A context-sensitive framework for the analysis of human signalling pathways in molecular interaction networks. 210-216 2013 29 Bioinform. 13 https://doi.org/10.1093/bioinformatics/btt240 https://www.wikidata.org/entity/Q36960698 db/journals/bioinformatics/bioinformatics29.html#LanZL13

Ruth Barshir Omer Basha Amir Eluk Ilan Y. Smoly Alexander Lan Esti Yeger Lotem The TissueNet database of human tissue protein-protein interactions. 841-844 2013 41 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gks1198 https://www.wikidata.org/entity/Q36491331 db/journals/nar/nar41.html#BarshirBESLL13

Omer Basha Shoval Tirman Amir Eluk Esti Yeger Lotem ResponseNet2.0: revealing signaling and regulatory pathways connecting your proteins and genes - now with human data. 198-203 2013 41 Nucleic Acids Res. Webserver-Issue https://doi.org/10.1093/nar/gkt532 https://www.wikidata.org/entity/Q30647117 db/journals/nar/nar41.html#BashaTEL13

Alex Lan Ilan Y. Smoly Guy Rapaport Susan Lindquist Ernest Fraenkel Esti Yeger Lotem ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening data. 424-429 2011 39 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkr359 https://www.wikidata.org/entity/Q33901921 db/journals/nar/nar39.html#LanSRLFL11

Ron Y. Pinter Oleg Rokhlenko Esti Yeger Lotem Michal Ziv-Ukelson Alignment of metabolic pathways. 3401-3408 2005 21 Bioinform. 16 https://doi.org/10.1093/bioinformatics/bti554 https://www.wikidata.org/entity/Q45904398 db/journals/bioinformatics/bioinformatics21.html#PinterRLZ05

Esti Yeger Lotem Computational analysis of integrated networks of transcription regulation and protein-protein interactions. Technion - Israel Institute of Technology, Israel 2004 https://technion.primo.exlibrisgroup.com/permalink/972TEC_INST/q1jq5o/alma990022685430203971 Gera Goft Esti Yeger Lotem The AS/400 Cluster Engine: A Case Study. 44-49 1999 conf/icppw/1999 ICPP Workshops https://doi.org/10.1109/ICPPW.1999.800039 https://doi.ieeecomputersociety.org/10.1109/ICPPW.1999.800039 db/conf/icppw/icppw1999.html#GoftL99 Esti Yeger Lotem Idit Keidar Danny Dolev Dynamic Voting for Consistent Primary Components. 63-71 1997 conf/podc/1997 PODC db/conf/podc/podc97.html#LotemKD97 https://doi.org/10.1145/259380.259424 Liad Alfandari Patrick Aloy Chanan M. Argov Raviv Artzy Mariana Babor Gary D. Bader Dawit Balcha Ruth Barshir Omer Basha Bridget E. Begg Anat Ben-Zvi Wenting Bian Christian Bowman-Colin Ruth Brignall Tiziana Cafarelli Michael A. Calderwood Francisco J. Campos-Laborie Amir Carmel Vered Chalifa-Caspi Benoît Charloteaux Suet-Feung Chin Dong-Sic Choi Soon-gang Choi Claudia Colabella Georges Coppin Atina G. Coté Meaghan Daley Cassandra D'Amata Steven Deimling Alice Desbuleux Danny Dolev Amélie Dricot Miquel Duran-Frigola Amir Eluk Hanane Ennajdaoui Dvir Flom Ernest Fraenkel Suzanne Gaudet Marinella Gebbia Florian Goebels Liana Goehring Gera Goft Anjali Gopal Gil Gruber Ghazal Haddad Tong Hao Madeleine F. Hardy Elodie Hatchi Idan Hekselman Mohamed Helmy David E. Hill Yves Jacob Yoseph Kassa Idit Keidar Dae-Kyum Kim Binyamin F. Kirson Nishka Kishore Jennifer J. Knapp István A. Kovács Luke Lambourne Alexander LanAlex Lan Serena Landini Or Lazarescu Irma Lemmens Eugene Lerman Roujia Li Natascha van Lieshout Susan Lindquist Katja Luck Andrew MacWilliams Dylan Markey Omry Mauer Miles W. Mee Joseph C. Mellor Joseph N. Paulson Ron Y. Pinter Carl Pollis Carles Pons Janusz Rak Sudharshan Rangarajan Guy Rapaport John Rasla Ashyad Rayhan Aaron D. Richardson David De Ridder Javier De Las Rivas Oleg Rokhlenko Thomas Rolland Frederick P. Roth Steffi De Rouck Adriana San-Miguel Sadie Schlabach Ronen Schuster Moran Sharon Yonat Shemer-Avni Netta Shemesh Yun Shen Dayag Sheykhkarimli Gloria M. Sheynkman Rotem Shpringer Omer Shwartz Eyal Simonovsky Ilan Y. Smoly Kerstin Spirohn Murat Tasan Jan Tavernier Bridget Teeking Alexander Tejeda Shoval Tirman Vincent Tropepe Jean-Claude Twizere Marc Vidal Ekaterina Vinogradov Miri Volozhinsky Yang Wang 0081 Robert J. Weatheritt Jochen Weile Yu Xia 0002 Anupama Yadav Xinping Yang Quan Zhong Michal Ziv-Ukelson Yazeed Zoabi