Psilocybin exerts distinct effects on resting state networks associated with serotonin and dopamine in mice.

Markus Rudin ETH Zurich, Switzerland https://orcid.org/0000-0003-4979-6567 https://www.wikidata.org/entity/Q93122914 https://id.loc.gov/authorities/names/n91091053 https://d-nb.info/gnd/109059972

Joanes Grandjean David Buehlmann Michaela Buerge Hannes Sigrist Erich Seifritz Franz X. Vollenweider Christopher R. Pryce Markus Rudin Psilocybin exerts distinct effects on resting state networks associated with serotonin and dopamine in mice. 117456 2021 225 NeuroImage https://doi.org/10.1016/j.neuroimage.2020.117456 https://www.wikidata.org/entity/Q100697845 db/journals/neuroimage/neuroimage225.html#GrandjeanBBSSVP21

Horea-Ioan Ioanas Markus Marks Valerio Zerbi Mehmet Fatih Yanik Markus Rudin An optimized registration workflow and standard geometric space for small animal brain imaging. 118386 2021 241 NeuroImage https://doi.org/10.1016/j.neuroimage.2021.118386 db/journals/neuroimage/neuroimage241.html#IoanasMZYR21

Horea-Ioan Ioanas Markus Marks Clément M. Garin Marc Dhenain Mehmet Fatih Yanik Markus Rudin An Automated Open-Source Workflow for Standards-Compliant Integration of Small Animal Magnetic Resonance Imaging Data. 2020 14 Frontiers Neuroinformatics https://doi.org/10.3389/fninf.2020.00005 https://www.wikidata.org/entity/Q89963962 db/journals/fini/fini14.html#IoanasMGDYR20 5

Marios Georgiadis Aileen Schroeter Zirui Gao Manuel Guizar-Sicairos Dmitry S. Novikov Els Fieremans Markus Rudin Retrieving neuronal orientations using 3D scanning SAXS and comparison with diffusion MRI. 2020 204 NeuroImage https://doi.org/10.1016/j.neuroimage.2019.116214 https://www.wikidata.org/entity/Q90378241 db/journals/neuroimage/neuroimage204.html#GeorgiadisSGGNF20

Wuwei Ren Helene Isler Martin Wolf 0006 Jorge Ripoll Markus Rudin Smart Toolkit for Fluorescence Tomography: Simulation, Reconstruction, and Validation. 16-26 2020 67 IEEE Trans. Biomed. Eng. 1 https://doi.org/10.1109/TBME.2019.2907460 https://www.wikidata.org/entity/Q93122918 db/journals/tbe/tbe67.html#RenIWRR20

Florian Aymanns Markus Rudin Horea-Ioan Ioanas COSplay: Contrast Optimized Stimulation Player. 1171 2019 4 J. Open Source Softw. 39 https://doi.org/10.21105/joss.01171 https://www.wikidata.org/entity/Q113307946 db/journals/jossw/jossw4.html#AymannsRI19

Valerio Zerbi Marija Markicevic Fabrizio Gasparini Aileen Schroeter Markus Rudin Nicole Wenderoth Inhibiting mGluR5 activity by AFQ056/Mavoglurant rescues circuit-specific functional connectivity in Fmr1 knockout mice. 392-402 2019 191 NeuroImage https://doi.org/10.1016/j.neuroimage.2019.02.051 https://www.wikidata.org/entity/Q91935694 db/journals/neuroimage/neuroimage191.html#ZerbiMGSRW19

Praveena Manogaran Christine Walker-Egger Marijana Samardzija Conny Waschkies Christian Grimm Markus Rudin Sven Schippling Exploring experimental autoimmune optic neuritis using multimodal imaging. 327-339 2018 175 NeuroImage https://doi.org/10.1016/j.neuroimage.2018.04.004 https://www.wikidata.org/entity/Q52328978 db/journals/neuroimage/neuroimage175.html#ManogaranWSWGRS18

Robert Becker Alfred Buck Volker Commichau Diogo Di Calafiori Günther Dissertori Lubomir Djambazov Afroditi Eleftheriou Peter Fischer Mikiko Ito Parisa Khateri Werner Lüstermann Josep F. Oliver Christian Ritzer Michael Ritzert Ulf Röser Markus Rudin Ilaria Sacco Paola Solevi Charalampos Tsoumpas Geoffrey Warnock Bruno Weber Matthias T. Wyss Agnieszka Zagozdzinska-Bochenck Dual Ring Prototype Electronic System for the Small Animal Fast Insert for MRI. 685-688 2018 ICECS https://doi.org/10.1109/ICECS.2018.8618047 conf/icecsys/2018 db/conf/icecsys/icecsys2018.html#BeckerBCCDDEFIK18

Tong Wu Joanes Grandjean Simone C. Bosshard Markus Rudin David C. Reutens Tianzi Jiang Altered regional connectivity reflecting effects of different anaesthesia protocols in the mouse brain. 190-199 2017 149 NeuroImage https://doi.org/10.1016/j.neuroimage.2017.01.074 https://www.wikidata.org/entity/Q38761812 db/journals/neuroimage/neuroimage149.html#WuGBRRJ17

Joanes Grandjean Maria Giulia Preti Thomas William Arthur Bolton Michaela Buerge Erich Seifritz Christopher R. Pryce Dimitri Van De Ville Markus Rudin Dynamic reorganization of intrinsic functional networks in the mouse brain. 497-508 2017 152 NeuroImage https://doi.org/10.1016/j.neuroimage.2017.03.026 https://www.wikidata.org/entity/Q47318070 db/journals/neuroimage/neuroimage152.html#GrandjeanPBBSPV17

Horea-Ioan Ioanas Bechara John Saab Markus Rudin LabbookDB: A Wet-Work-Tracking Database Application Framework. 20-27 2017 SciPy https://doi.org/10.25080/shinma-7f4c6e7-004 conf/scipy/2017 db/conf/scipy/scipy2017.html#IoanasSR17

Qasim Bukhari David Borsook Markus Rudin Lino Becerra Random Forest Segregation of Drug Responses May Define Regions of Biological Significance. 2016 10 Frontiers Comput. Neurosci. https://doi.org/10.3389/fncom.2016.00021 https://www.wikidata.org/entity/Q38852152 db/journals/ficn/ficn10.html#BukhariBRB16 21

Joanes Grandjean Rebecca Derungs Luka Kulic Tobias Welt R. Mark Henkelman Roger M. Nitsch Markus Rudin Complex interplay between brain function and structure during cerebral amyloidosis in APP transgenic mouse strains revealed by multi-parametric MRI comparison. 1-11 2016 134 NeuroImage https://doi.org/10.1016/j.neuroimage.2016.03.042 https://www.wikidata.org/entity/Q51403503 db/journals/neuroimage/neuroimage134.html#GrandjeanDKWHNR16

Joanes Grandjean Damiano Azzinnari Aline Seuwen Hannes Sigrist Erich Seifritz Christopher R. Pryce Markus Rudin Chronic psychosocial stress in mice leads to changes in brain functional connectivity and metabolite levels comparable to human depression. 544-552 2016 142 NeuroImage https://doi.org/10.1016/j.neuroimage.2016.08.013 https://www.wikidata.org/entity/Q47399339 db/journals/neuroimage/neuroimage142.html#GrandjeanASSSPR16

Wuwei Ren Andreas Elmer Mark-Aurel Augath Markus Rudin FEM-based simulation of a fluorescence tomography experiment using anatomical MR images. 978828 2016 Biomedical Applications in Molecular, Structural, and Functional Imaging https://doi.org/10.1117/12.2216454 conf/mibam/2016 db/conf/mibam/mibam2016.html#RenEAR16

Felix Schlegel Aileen Schroeter Markus Rudin The hemodynamic response to somatosensory stimulation in mice depends on the anesthetic used: Implications on analysis of mouse fMRI data. 40-49 2015 116 NeuroImage https://doi.org/10.1016/j.neuroimage.2015.05.013 https://www.wikidata.org/entity/Q30952579 db/journals/neuroimage/neuroimage116.html#SchlegelSR15

Aline Seuwen Aileen Schroeter Joanes Grandjean Markus Rudin Metabolic changes assessed by MRS accurately reflect brain function during drug-induced epilepsy in mice in contrast to fMRI-based hemodynamic readouts. 55-63 2015 120 NeuroImage https://doi.org/10.1016/j.neuroimage.2015.07.004 https://www.wikidata.org/entity/Q40746021 db/journals/neuroimage/neuroimage120.html#SeuwenSGR15

Valerio Zerbi Joanes Grandjean Markus Rudin Nicole Wenderoth Mapping the mouse brain with rs-fMRI: An optimized pipeline for functional network identification. 11-21 2015 123 NeuroImage https://doi.org/10.1016/j.neuroimage.2015.07.090 https://www.wikidata.org/entity/Q38971984 db/journals/neuroimage/neuroimage123.html#ZerbiGRW15

Esther Sydekum Arko Ghosh Miriam Gullo Christof Baltes Martin E. Schwab Markus Rudin Rapid functional reorganization of the forelimb cortical representation after thoracic spinal cord injury in adult rats. 72-79 2014 87 NeuroImage https://doi.org/10.1016/j.neuroimage.2013.10.045 https://www.wikidata.org/entity/Q44919768 db/journals/neuroimage/neuroimage87.html#SydekumGGBSR14

Aileen Schroeter Felix Schlegel Aline Seuwen Joanes Grandjean Markus Rudin Specificity of stimulus-evoked fMRI responses in the mouse: The influence of systemic physiological changes associated with innocuous stimulation under four different anesthetics. 372-384 2014 94 NeuroImage https://doi.org/10.1016/j.neuroimage.2014.01.046 https://www.wikidata.org/entity/Q47916035 db/journals/neuroimage/neuroimage94.html#SchroeterSSGR14

Joanes Grandjean Aileen Schroeter Imene Batata Markus Rudin Optimization of anesthesia protocol for resting-state fMRI in mice based on differential effects of anesthetics on functional connectivity patterns. 838-847 2014 102 NeuroImage https://doi.org/10.1016/j.neuroimage.2014.08.043 https://www.wikidata.org/entity/Q47822034 db/journals/neuroimage/neuroimage102.html#GrandjeanSBR14

Florence Razoux Christof Baltes Thomas Mueggler Aline Seuwen Holger Russig Isabelle Mansuy Markus Rudin Functional MRI to assess alterations of functional networks in response to pharmacological or genetic manipulations of the serotonergic system in mice. 326-336 2013 74 NeuroImage https://doi.org/10.1016/j.neuroimage.2013.02.031 https://www.wikidata.org/entity/Q45034351 db/journals/neuroimage/neuroimage74.html#RazouxBMSRMR13

Thomas Mueggler Hartmut Pohl Christof Baltes Dieter Riethmacher Ueli Suter Markus Rudin MRI signature in a novel mouse model of genetically induced adult oligodendrocyte cell death. 1028-1036 2012 59 NeuroImage 2 https://doi.org/10.1016/j.neuroimage.2011.09.001 https://www.wikidata.org/entity/Q39704342 db/journals/neuroimage/neuroimage59.html#MuegglerPBRSR12

Florian Stuker Christof Baltes Katerina Dikaiou Divya Vats Lucio Carrara Edoardo Charbon Jorge Ripoll Markus Rudin Hybrid Small Animal Imaging System Combining Magnetic Resonance Imaging With Fluorescence Tomography Using Single Photon Avalanche Diode Detectors. 1265-1273 2011 30 IEEE Trans. Medical Imaging 6 https://doi.org/10.1109/TMI.2011.2112669 https://www.wikidata.org/entity/Q33819462 db/journals/tmi/tmi30.html#StukerBDVCCRR11

Esther Sydekum Christof Baltes Arko Ghosh Thomas Mueggler Martin E. Schwab Markus Rudin Functional reorganization in rat somatosensory cortex assessed by fMRI: Elastic image registration based on structural landmarks in fMRI images and application to spinal cord injured rats. 1345-1354 2009 44 NeuroImage 4 https://doi.org/10.1016/j.neuroimage.2008.10.015 https://www.wikidata.org/entity/Q45813406 db/journals/neuroimage/neuroimage44.html#SydekumBGMSR09

Mark-Aurel Augath Florian Aymanns Damiano Azzinnari Christof Baltes Imene Batata Lino Becerra Robert Becker Thomas Bolton 0001Thomas William Arthur Bolton David Borsook Simone C. Bosshard Alfred Buck David Buehlmann Michaela Buerge Qasim Bukhari Diogo Di Calafiori Lucio Carrara Edoardo Charbon Volker Commichau Rebecca Derungs Marc Dhenain Katerina Dikaiou Günther Dissertori Lubomir Djambazov Afroditi Eleftheriou Andreas Elmer Els Fieremans Peter Fischer Zirui Gao Clément M. Garin Fabrizio Gasparini Marios Georgiadis Arko Ghosh Joanes Grandjean Christian Grimm Manuel Guizar-Sicairos Miriam Gullo R. Mark Henkelman Horea-Ioan Ioanas Helene Isler Mikiko Ito Tianzi Jiang Parisa Khateri Luka Kulic Werner Lüstermann Praveena Manogaran Isabelle Mansuy Marija Markicevic Markus Marks Thomas Mueggler Roger M. Nitsch Dmitry S. Novikov Josep F. Oliver Hartmut Pohl Maria Giulia Preti Christopher R. Pryce Florence Razoux Wuwei Ren David C. Reutens Dieter Riethmacher Jorge Ripoll Christian Ritzer Michael Ritzert Ulf Röser Holger Russig Bechara SaabBechara John Saab Ilaria Sacco Marijana Samardzija Sven Schippling Felix Schlegel Aileen Schroeter Martin E. Schwab Erich Seifritz Aline Seuwen Hannes Sigrist Paola Solevi Florian Stuker Ueli Suter Esther Sydekum Charalampos Tsoumpas Divya Vats Dimitri Van De Ville Franz X. Vollenweider Christine Walker-Egger Geoffrey Warnock Conny Waschkies Bruno Weber Tobias Welt Nicole Wenderoth Martin Wolf 0006 Tong Wu Matthias T. Wyss Mehmet Fatih Yanik Agnieszka Zagozdzinska-Bochenck Valerio Zerbi