Correction: ToxoNet: A high confidence map of protein-protein interactions in Toxoplasma gondii.

Andrew Emili

Lakshmipuram S. Swapna Grant C. Stevens Aline Sardinha-Silva Lucas Zhongming Hu Verena Brand Daniel D. Fusca Cuihong Wan Xuejian Xiong Jon P. Boyle Michael E. Grigg Andrew Emili John Parkinson Correction: ToxoNet: A high confidence map of protein-protein interactions in Toxoplasma gondii. 2026 1014086 22 PLoS Comput. Biol. 3 https://doi.org/10.1371/journal.pcbi.1014086 db/journals/ploscb/ploscb22.html#SwapnaSSHBFWXBGEP26 streams/journals/ploscb

Lakshmipuram S. Swapna Grant C. Stevens Aline Sardinha-Silva Lucas Zhongming Hu Verena Brand Daniel D. Fusca Cuihong Wan Xuejian Xiong Jon P. Boyle Michael E. Grigg Andrew Emili John Parkinson ToxoNet: A high confidence map of protein-protein interactions in Toxoplasma gondii. 1012208 2024 20 PLoS Comput. Biol. 6 https://doi.org/10.1371/journal.pcbi.1012208 db/journals/ploscb/ploscb20.html#SwapnaSSHBFWXBGEP24 streams/journals/ploscb

Chen Xu Bing Wang Lin Yang Lucas Zhongming Hu Lanxing Yi Yaxuan Wang Shenglan Chen Andrew Emili Cuihong Wan Global Landscape of Native Protein Complexes in Synechocystis sp. PCC 6803. 715-727 2022 August 20 Genom. Proteom. Bioinform. 4 https://doi.org/10.1016/j.gpb.2020.06.020 db/journals/gpb/gpb20.html#XuWYHYWCEW22

James Vlasblom Khalid Zuberi Harold Rodriguez Roland Arnold Alla Gagarinova Viktor Deineko Ashwani Kumar Elisa Leung Kamran Rizzolo Bahram Samanfar Luke Chang Sadhna Phanse Ashkan Golshani Jack Greenblatt Walid A. Houry Andrew Emili Quaid Morris Gary D. Bader Mohan Babu Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli. 306-310 2015 31 Bioinform. 3 https://doi.org/10.1093/bioinformatics/btu671 https://www.wikidata.org/entity/Q35020465 db/journals/bioinformatics/bioinformatics31.html#VlasblomZRAGDKLRSCPGGHEMBB15

Clement Chung Andrew Emili Brendan J. Frey Non-parametric Bayesian approach to post-translational modification refinement of predictions from tandem mass spectrometry. 821-829 2013 29 Bioinform. 7 https://doi.org/10.1093/bioinformatics/btt056 https://www.wikidata.org/entity/Q34590845 db/journals/bioinformatics/bioinformatics29.html#ChungEF13

Clement Chung Jian Liu Andrew Emili Brendan J. Frey Computational refinement of post-translational modifications predicted from tandem mass spectrometry. 797-806 2011 27 Bioinform. 6 https://doi.org/10.1093/bioinformatics/btr017 https://www.wikidata.org/entity/Q34635930 db/journals/bioinformatics/bioinformatics27.html#ChungLEF11

Andrei L. Turinsky Brian Turner Rosanne C. Borja James A. Gleeson Michael Heath Shuye Pu Thomas Switzer Dong Dong Yunchen Gong Tuan On Xuejian Xiong Andrew Emili Jack Greenblatt John Parkinson Zhaolei Zhang Shoshana J. Wodak DAnCER: Disease-Annotated Chromatin Epigenetics Resource. 889-894 2011 39 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkq857 https://www.wikidata.org/entity/Q24609602 db/journals/nar/nar39.html#TurinskyTBGHPSDGOXEGPZW11

Pingzhao Hu Hui Jiang 0001 Andrew Emili Predicting protein functions by relaxation labelling protein interaction network. 64 2010 11 BMC Bioinform. S-1 https://doi.org/10.1186/1471-2105-11-S1-S64 https://www.wikidata.org/entity/Q33528271 db/journals/bmcbi/bmcbi11S.html#HuJE10

Chong Su José M. Peregrín-Alvarez Gareth Butland Sadhna Phanse Vincent Fong Andrew Emili John Parkinson Bacteriome.org - an integrated protein interaction database for E. coli. 632-636 2008 36 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkm807 https://www.wikidata.org/entity/Q36454044 db/journals/nar/nar36.html#SuPBPFEP08

Delbert Dueck Brendan J. Frey Nebojsa Jojic Vladimir Jojic Guri Giaever Andrew Emili Gabe Musso Robert Hegele Constructing Treatment Portfolios Using Affinity Propagation. 360-371 2008 RECOMB https://doi.org/10.1007/978-3-540-78839-3_31 conf/recomb/2008 db/conf/recomb/recomb2008.html#DueckFJJGEMH08

Jennifer Listgarten Radford M. Neal Sam T. Roweis Peter Wong Andrew Emili Difference detection in LC-MS data for protein biomarker discovery. 198-204 2007 23 Bioinform. 2 https://doi.org/10.1093/bioinformatics/btl326 https://www.wikidata.org/entity/Q31094462 db/journals/bioinformatics/bioinformatics23.html#ListgartenNRWE07

Anitha Kannan Andrew Emili Brendan J. Frey A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements. 325-338 2007 conf/recomb/2007 RECOMB https://doi.org/10.1007/978-3-540-71681-5_23 db/conf/recomb/recomb2007.html#KannanEF07

Sylvain Pitre Frank K. H. A. Dehne Albert Chan James Cheetham Alex Duong Andrew Emili Marinella Gebbia Jack Greenblatt Matthew Jessulat Nevan J. Krogan Xuemei Luo Ashkan Golshani PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs. 365 2006 7 BMC Bioinform. https://doi.org/10.1186/1471-2105-7-365 https://www.wikidata.org/entity/Q27934099 db/journals/bmcbi/bmcbi7.html#PitreDCCDEGGJKLG06

Peyman Najmabadi Andrew A. Goldenberg Andrew Emili A scalable robotic-based laboratory automation system for medium-sized biotechnology laboratories. 166-171 2005 CASE https://doi.org/10.1109/COASE.2005.1506763 conf/case/2005 db/conf/case/case2005.html#NajmabadiGE05 Jennifer Listgarten Radford M. Neal Sam T. Roweis Andrew Emili Multiple Alignment of Continuous Time Series. 2004 conf/nips/2004 NIPS https://proceedings.neurips.cc/paper/2004/hash/362387494f6be6613daea643a7706a42-Abstract.html http://papers.nips.cc/paper/2721-multiple-alignment-of-continuous-time-series db/conf/nips/nips2004.html#ListgartenNRE04 817-824 Roland Arnold Mohan Babu Gary D. Bader Rosanne C. Borja Jon P. Boyle Verena Brand Gareth Butland Albert Chan Luke Chang James Cheetham Shenglan Chen Clement Chung Frank DehneFrank K. H. A. Dehne Viktor Deineko Dong Dong Delbert Dueck Alex Duong Vincent Fong Brendan J. Frey Daniel D. Fusca Alla Gagarinova Marinella Gebbia Guri Giaever James A. Gleeson Andrew A. Goldenberg Ashkan Golshani Yunchen Gong Jack Greenblatt Michael E. Grigg Michael Heath Robert Hegele Walid A. Houry Lucas Zhongming Hu Pingzhao Hu Matthew Jessulat Hui Jiang 0001 Nebojsa Jojic Vladimir Jojic Anitha Kannan Nevan J. Krogan Ashwani Kumar Elisa Leung Jennifer Listgarten Jian Liu Xuemei Luo Quaid Morris Gabe Musso Peyman Najmabadi Radford M. Neal Tuan On John Parkinson José M. Peregrín-Alvarez Sadhna Phanse Sylvain Pitre Shuye Pu Kamran Rizzolo Harold Rodriguez Sam T. Roweis Bahram Samanfar Aline Sardinha-Silva Grant C. Stevens Chong Su Lakshmipuram S. Swapna Thomas Switzer Andrei L. Turinsky Brian Turner James Vlasblom Cuihong Wan Bing Wang Yaxuan Wang Shoshana J. Wodak Peter Wong Xuejian Xiong Chen Xu Lin Yang Lanxing Yi Zhaolei Zhang Khalid Zuberi