Inferring gene ontologies from pairwise similarity data.

Janusz Dutkowski

Michael Kramer Janusz Dutkowski Michael Yu Vineet Bafna Trey Ideker Inferring gene ontologies from pairwise similarity data. 34-42 2014 30 Bioinform. 12 https://doi.org/10.1093/bioinformatics/btu282 https://www.wikidata.org/entity/Q30831301 db/journals/bioinformatics/bioinformatics30.html#KramerDYBI14

Janusz Dutkowski Keiichiro Ono Michael Kramer Michael Yu Dexter Pratt Barry Demchak Trey Ideker NeXO Web: the NeXO ontology database and visualization platform. 1269-1274 2014 42 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkt1192 https://www.wikidata.org/entity/Q37661919 db/journals/nar/nar42.html#DutkowskiOKYPDI14

Janusz Dutkowski Jerzy Tiuryn A Probabilistic Model of Neutral and Selective Dynamics of Protein Network Evolution. 631-642 2013 20 J. Comput. Biol. 9 https://doi.org/10.1089/cmb.2012.0295 https://www.wikidata.org/entity/Q41904931 db/journals/jcb/jcb20.html#DutkowskiT13

Erhan Bilal Janusz Dutkowski Justin Guinney In Sock Jang Benjamin A. Logsdon Gaurav Pandey 0002 Benjamin A. Sauerwine Yishai Shimoni Hans Kristian Moen Vollan Brigham H. Mecham Oscar M. Rueda Jorg Tost Christina Curtis Mariano J. Alvarez Vessela N. Kristensen Samuel Aparicio Anne-Lise Børresen-Dale Carlos Caldas Andrea Califano Stephen H. Friend Trey Ideker Eric E. Schadt Gustavo A. Stolovitzky Adam A. Margolin Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling. 2013 9 PLoS Comput. Biol. 5 https://doi.org/10.1371/journal.pcbi.1003047 https://www.wikidata.org/entity/Q34720254 db/journals/ploscb/ploscb9.html#BilalDGJLPSSVMRTCAKABCCFISSM13

Janusz Dutkowski Trey Ideker Protein Networks as Logic Functions in Development and Cancer. 2011 7 PLoS Comput. Biol. 9 https://doi.org/10.1371/journal.pcbi.1002180 https://www.wikidata.org/entity/Q34042616 db/journals/ploscb/ploscb7.html#DutkowskiI11

Michal Wozniak 0002 Jerzy Tiuryn Janusz Dutkowski MODEVO: exploring modularity and evolution of protein interaction networks. 1790-1791 2010 26 Bioinform. 14 https://doi.org/10.1093/bioinformatics/btq274 https://www.wikidata.org/entity/Q51694178 db/journals/bioinformatics/bioinformatics26.html#WozniakTD10

Janusz Dutkowski Jerzy Tiuryn Phylogeny-guided interaction mapping in seven eukaryotes. 393 2009 10 BMC Bioinform. https://doi.org/10.1186/1471-2105-10-393 https://www.wikidata.org/entity/Q33516895 db/journals/bmcbi/bmcbi10.html#DutkowskiT09

Anna Gambin Ewa Szczurek Janusz Dutkowski Magda Bakun Michal Dadlez Classification of peptide mass fingerprint data by novel no-regret boosting method. 460-473 2009 39 Comput. Biol. Medicine 5 https://doi.org/10.1016/j.compbiomed.2009.03.006 https://www.wikidata.org/entity/Q33433769 db/journals/cbm/cbm39.html#GambinSDBD09

Janusz Dutkowski Anna Gambin On consensus biomarker selection. 2007 8 BMC Bioinform. S-5 https://doi.org/10.1186/1471-2105-8-S5-S5 https://www.wikidata.org/entity/Q33287816 db/journals/bmcbi/bmcbi8S.html#DutkowskiG07

Janusz Dutkowski Jerzy Tiuryn Identification of functional modules from conserved ancestral protein-protein interactions. 149-158 2007 conf/ismb/2007 ISMB/ECCB (Supplement of Bioinformatics) https://doi.org/10.1093/bioinformatics/btm194 https://www.wikidata.org/entity/Q48392352 db/conf/ismb/ismb2007.html#DutkowskiT07 Mariano J. Alvarez Samuel Aparicio Vineet Bafna Magda Bakun Erhan Bilal Anne-Lise Børresen-Dale Carlos Caldas Andrea Califano Christina Curtis Michal Dadlez Barry Demchak Stephen H. Friend Anna Gambin Justin Guinney Trey Ideker In Sock Jang Michael Kramer Vessela N. Kristensen Benjamin A. Logsdon Adam A. Margolin Brigham H. Mecham Keiichiro Ono Gaurav Pandey 0002 Dexter Pratt Oscar M. Rueda Benjamin A. Sauerwine Eric E. Schadt Yishai Shimoni Gustavo StolovitzkyGustavo A. Stolovitzky Ewa Szczurek Jerzy Tiuryn Jorg Tost Hans Kristian Moen Vollan Michal Wozniak 0002 Michael Yu