BASE: a web service for providing compound-protein binding affinity prediction datasets with reduced similarity bias.

Gwan-Su Yi

Hyojin Son Sechan Lee Jaeuk Kim Haangik Park Myeong-Ha Hwang Gwan-Su Yi BASE: a web service for providing compound-protein binding affinity prediction datasets with reduced similarity bias. 340 2024 December 25 BMC Bioinform. 1 https://doi.org/10.1186/s12859-024-05968-3 db/journals/bmcbi/bmcbi25.html#SonLKPHY24 streams/journals/bmcbi

Junseok Park Seongkuk Park Gwangmin Kim Kwangmin Kim Jaegyun Jung Sunyong Yoo Gwan-Su Yi Doheon Lee Supplementary data for the manuscript entitled "Reliable data collection in participatory trials to assess digital healthcare applications". 2022 May https://doi.org/10.21227/at9y-6657 IEEE DataPort streams/repo/ieeedataport

Junseok Park Seongkuk Park Gwangmin Kim Kwangmin Kim Jaegyun Jung Sunyong Yoo Gwan-Su Yi Doheon Lee Reliable Data Collection in Participatory Trials to Assess Digital Healthcare Applications. 79472-79490 2020 8 IEEE Access https://doi.org/10.1109/ACCESS.2020.2985122 https://www.wikidata.org/entity/Q114298957 db/journals/access/access8.html#ParkPKKJYYL20

Yoon Hyeok Lee Hojae Choi Seongyong Park Boah Lee Gwan-Su Yi Drug repositioning for enzyme modulator based on human metabolite-likeness. 15-24 2017 18 BMC Bioinform. 7 https://doi.org/10.1186/s12859-017-1637-5 https://www.wikidata.org/entity/Q33802239 db/journals/bmcbi/bmcbi18S.html#LeeCPLY17

Kimin Oh Gwan-Su Yi Prediction of scaffold proteins based on protein interaction and domain architectures. 220 2016 17 BMC Bioinform. S-6 https://doi.org/10.1186/s12859-016-1079-5 https://www.wikidata.org/entity/Q36094691 db/journals/bmcbi/bmcbi17S.html#OhY16

Kihoon Cha Taeho Hwang Kimin Oh Gwan-Su Yi Discovering transnosological molecular basis of human brain diseases using biclustering analysis of integrated gene expression data. S7 2015 15-S BMC Medical Informatics Decis. Mak. S-1 https://doi.org/10.1186/1472-6947-15-S1-S7 https://www.wikidata.org/entity/Q30965644 db/journals/midm/midm15S.html#ChaHOY15

Kimin Oh Gwan-Su Yi Prediction of Scaffold Proteins based on Protein Interaction and Domain Architectures. 30 2015 DTMBIO@CIKM https://doi.org/10.1145/2811163.2811186 conf/cikm/2015dtmbio db/conf/cikm/dtmbio2015.html#OhY15 Kimin Oh Taeho Hwang Kihoon Cha Gwan-Su Yi Functional module-centric interpretation of transcriptomic change between human and chimpanzee cerebral cortex. 162-167 2014 BIBM https://doi.org/10.1109/BIBM.2014.6999146 https://doi.ieeecomputersociety.org/10.1109/BIBM.2014.6999146 conf/bibm/2014 db/conf/bibm/bibm2014.html#OhHCY14 Bumki Min Gwan-Su Yi Inference of Disease E3s from Integrated Functional Relation Network. 13-16 2014 DTMBIO@CIKM https://doi.org/10.1145/2665970.2665979 conf/cikm/2014dtmbio db/conf/cikm/dtmbio2014.html#MinY14 Kihoon Cha Kimin Oh Taeho Hwang Gwan-Su Yi Identification of Coexpressed Gene Modules across Multiple Brain Diseases by a Biclustering Analysis on Integrated Gene Expression Data. 17 2014 DTMBIO@CIKM https://doi.org/10.1145/2665970.2665978 conf/cikm/2014dtmbio db/conf/cikm/dtmbio2014.html#ChaOHY14

Chiyong Kang Hyeji Yu Gwan-Su Yi Finding type 2 diabetes causal single nucleotide polymorphism combinations and functional modules from genome-wide association data. S3 2013 13 BMC Medical Informatics Decis. Mak. S-1 https://doi.org/10.1186/1472-6947-13-S1-S3 https://www.wikidata.org/entity/Q30613341 db/journals/midm/midm13-S1.html#KangYY13

Min-Sung Kim Gwan-Su Yi Comprehensive human membrane protein database. 1-6 2012 BIBM https://doi.org/10.1109/BIBM.2012.6392683 https://doi.ieeecomputersociety.org/10.1109/BIBM.2012.6392683 conf/bibm/2012 db/conf/bibm/bibm2012.html#KimY12 Chiyong Kang Hyeji Yu Gwan-Su Yi Detecting type 2 diabetes causal single nucleotide polymorphism combinations from a genome-wide association study dataset with optimal filtration. 1-8 2012 DTMBIO@CIKM https://doi.org/10.1145/2390068.2390070 conf/cikm/2012dtmbio db/conf/cikm/dtmbio2012.html#KangYY12

Chiyong Kang Gwan-Su Yi Identification of ubiquitin/ubiquitin-like protein modification from tandem mass spectra with various PTMs. S8 2011 12 BMC Bioinform. S-14 https://doi.org/10.1186/1471-2105-12-S14-S8 https://www.wikidata.org/entity/Q34175540 db/journals/bmcbi/bmcbi12S.html#KangY11

Yul Kim Bumki Min Gwan-Su Yi IDDI: The Integrated Domain-Domain Interaction Analysis System. 520-525 2011 BIBM https://doi.org/10.1109/BIBM.2011.88 https://doi.ieeecomputersociety.org/10.1109/BIBM.2011.88 conf/bibm/2011 db/conf/bibm/bibm2011.html#KimMY11

Taeho Hwang Choong-Hyun Sun Taegyun Yun Gwan-Su Yi FiGS: a filter-based gene selection workbench for microarray data. 50 2010 11 BMC Bioinform. https://doi.org/10.1186/1471-2105-11-50 https://www.wikidata.org/entity/Q33526505 db/journals/bmcbi/bmcbi11.html#HwangSYY10

Choong-Hyun Sun Taeho Hwang Kimin Oh Gwan-Su Yi DynaMod: dynamic functional modularity analysis. 103-108 2010 38 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkq362 https://www.wikidata.org/entity/Q41899555 db/journals/nar/nar38.html#SunHOY10

Taegyun Yun Taeho Hwang Kihoon Cha Gwan-Su Yi CLIC: clustering analysis of large microarray datasets with individual dimension-based clustering. 246-253 2010 38 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkq516 https://www.wikidata.org/entity/Q39696038 db/journals/nar/nar38.html#YunHCY10

Yunkyu Choi Seok Kim Gwan-Su Yi Jinah Park Protein-Protein Interaction Network and Gene Ontology. 159-169 2010 Future Application and Middleware Technology on e-Science https://doi.org/10.1007/978-1-4419-1719-5_16 books/sp/byeon10 db/books/collections/Byeon2010.html#ChoiKYP10

Choong-Hyun Sun Min-Sung Kim Youngwoong Han Gwan-Su Yi COFECO: composite function annotation enriched by protein complex data. 350-355 2009 37 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkp331 https://www.wikidata.org/entity/Q33442731 db/journals/nar/nar37.html#SunKHY09

Hodong Lee Gwan-Su Yi Jong-Chan Park E3Miner: a text mining tool for ubiquitin-protein ligases. 416-422 2008 36 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkn286 https://www.wikidata.org/entity/Q39785896 db/journals/nar/nar36.html#LeeYP08

Jinki Kim Gwan-Su Yi Modeling of the Effect of Crosstalk in Apoptotic Pathways on Caspase-3 Activation. 11-16 2007 FBIT https://doi.org/10.1109/FBIT.2007.133 https://doi.ieeecomputersociety.org/10.1109/FBIT.2007.133 conf/fbit/2007 db/conf/fbit/fbit2007.html#KimY07 Taegyun Yun Suyoung Kim Taeho Hwang Gwan-Su Yi A Direct Clustering Method for Imperfect Microarray Data without Imputation. 183-187 2007 FBIT https://doi.org/10.1109/FBIT.2007.135 https://doi.ieeecomputersociety.org/10.1109/FBIT.2007.135 conf/fbit/2007 db/conf/fbit/fbit2007.html#YunKHY07 Geehyuk Lee Gwan-Su Yi The Chaotic Netlet Map. 104-112 2007 conf/isnn/2007-2 ISNN (2) https://doi.org/10.1007/978-3-540-72393-6_14 db/conf/isnn/isnn2007-2.html#LeeY07 Min-Sung Kim Choong-Hyun Sun Jinki Kim Gwan-Su Yi Whole Genome Alignment with BLAST on Grid Environment. 47 2006 conf/IEEEcit/2006 CIT https://doi.org/10.1109/CIT.2006.196 https://doi.ieeecomputersociety.org/10.1109/CIT.2006.196 db/conf/IEEEcit/IEEEcit2006.html#KimSKY06 Choong-Hyun Sun Youngwoong Han Minseong Kim Gwan-Su Yi BioGridPSE: Integrated Solution for Bioinformatics Analysis Using Computing and Data Grid. 514-521 2006 conf/gcc/2006 GCC https://doi.org/10.1109/GCC.2006.33 https://doi.ieeecomputersociety.org/10.1109/GCC.2006.33 db/conf/gcc/gcc2006.html#SunHKY06

Ki-Yeol Kim Byoung-Jin Kim Gwan-Su Yi Reuse of imputed data in microarray analysis increases imputation efficiency. 160 2004 5 BMC Bioinform. https://doi.org/10.1186/1471-2105-5-160 https://www.wikidata.org/entity/Q24794335 db/journals/bmcbi/bmcbi5.html#KimKY04

Choong-Hyun Sun Byoung-Jin Kim Gwan-Su Yi Hyoungwoo Park A Model of Problem Solving Environment for Integrated Bioinformatics Solution on Grid by Using Condor. 935-938 https://doi.org/10.1007/978-3-540-30208-7_142 2004 conf/gcc/2004 GCC db/conf/gcc/gcc2004.html#SunKYP04 Kihoon Cha Hojae Choi Yunkyu Choi Youngwoong Han Myeong-Ha Hwang Taeho Hwang Jaegyun Jung Chiyong Kang Byoung-Jin Kim Gwangmin Kim Jaeuk Kim Jinki Kim Ki-Yeol Kim Kwangmin Kim Min-Sung Kim Minseong Kim Seok Kim Suyoung Kim Yul Kim Boah Lee Doheon Lee Geehyuk Lee Hodong Lee Sechan Lee Yoon Hyeok Lee Bumky MinBumki Min Kimin Oh Haangik Park Hyoungwoo Park Jinah Park Jong-Chan Park Junseok Park Seongkuk Park Seongyong Park Hyojin Son Choong-Hyun Sun Sunyong Yoo Hyeji Yu Taegyun Yun