benchdamic: benchmarking of differential abundance methods for microbiome data.

Nicola Vitulo

Matteo Calgaro Chiara Romualdi Davide Risso Nicola Vitulo benchdamic: benchmarking of differential abundance methods for microbiome data. 2023 January 39 Bioinform. 1 https://doi.org/10.1093/bioinformatics/btac778 db/journals/bioinformatics/bioinformatics39.html#CalgaroRRV23

Loris Bertoldi Claudio Forcato Nicola Vitulo Giovanni Birolo Fabio De Pascale Erika Feltrin Riccardo Schiavon Franca Anglani Susanna Negrisolo Alessandra Zanetti Francesca D'Avanzo Rosella Tomanin Georgine Faulkner Alessandro Vezzi Giorgio Valle QueryOR: a comprehensive web platform for genetic variant analysis and prioritization. 225:1-225:11 2017 18 BMC Bioinform. 1 https://doi.org/10.1186/s12859-017-1654-4 https://www.wikidata.org/entity/Q36358400 db/journals/bmcbi/bmcbi18.html#BertoldiFVBPFSA17

Davide Campagna Andrea Telatin Claudio Forcato Nicola Vitulo Giorgio Valle PASS-bis: a bisulfite aligner suitable for whole methylome analysis of Illumina and SOLiD reads. 268-270 2013 29 Bioinform. 2 https://doi.org/10.1093/bioinformatics/bts675 https://www.wikidata.org/entity/Q34312518 db/journals/bioinformatics/bioinformatics29.html#CampagnaTFVV13

Davide Campagna Alessandro Albiero Alessandra Bilardi Elisa Caniato Claudio Forcato Svetlin Manavski Nicola Vitulo Giorgio Valle PASS: a program to align short sequences. 967-968 2009 25 Bioinform. 7 https://doi.org/10.1093/bioinformatics/btp087 https://www.wikidata.org/entity/Q51851743 db/journals/bioinformatics/bioinformatics25.html#CampagnaABCFMVV09

Nicola Vitulo Alessandro Vezzi Chiara Romualdi Stefano Campanaro Giorgio Valle A global gene evolution analysis on <i>Vibrionaceae </i>family using phylogenetic profile. 2007 8 BMC Bioinform. S-1 https://doi.org/10.1186/1471-2105-8-S1-S23 https://www.wikidata.org/entity/Q33281941 db/journals/bmcbi/bmcbi8S.html#VituloVRCV07

Davide Campagna Chiara Romualdi Nicola Vitulo Micky Del Favero Matej Lexa Nicola Cannata Giorgio Valle RAP: a new computer program for de novo identification of repeated sequences in whole genomes. 582-588 2005 21 Bioinform. 5 https://doi.org/10.1093/bioinformatics/bti039 https://www.wikidata.org/entity/Q48523510 db/journals/bioinformatics/bioinformatics21.html#CampagnaRVFLCV05

Chiara Romualdi Nicola Vitulo Micky Del Favero Gerolamo Lanfranchi MIDAW: a web tool for statistical analysis of microarray data. 644-649 2005 33 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gki497 https://www.wikidata.org/entity/Q24813526 db/journals/nar/nar33.html#RomualdiVFL05

Alessandro Albiero Franca Anglani Loris Bertoldi Alessandra Bilardi Giovanni Birolo Matteo Calgaro Davide Campagna Stefano Campanaro Elisa Caniato Nicola Cannata Francesca D'Avanzo Georgine Faulkner Micky Del Favero Erika Feltrin Claudio Forcato Gerolamo Lanfranchi Matej Lexa Svetlin Manavski Susanna Negrisolo Fabio De Pascale Davide Risso Chiara Romualdi Riccardo Schiavon Andrea Telatin Rosella Tomanin Giorgio Valle Alessandro Vezzi Alessandra Zanetti