ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.

Edwin Jacox

Matija Brozovic Christelle Dantec Justine Dardaillon Delphine Dauga Emmanuel Faure Mathieu Gineste Alexandra Louis Magali Naville Kazuhiro R. Nitta Jacques Piette Wendy Reeves Céline Scornavacca Paul Simion Renaud Vincentelli Maelle Bellec Sameh Ben Aicha Marie Fagotto Marion Guéroult-Bellone Maximilian Haeussler Edwin Jacox Elijah K. Lowe Mickaël Mendez Alexis Roberge Alberto Stolfi Rui Yokomori C. Titus Brown Christian Cambillau Lionel A. Christiaen Frédéric Delsuc Emmanuel J. P. Douzery Rémi Dumollard Takehiro Kusakabe Kenta Nakai Hiroki Nishida Yutaka Satou Billie J. Swalla Michael Veeman Jean-Nicolas Volff Patrick Lemaire ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. D718-D725 2018 46 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkx1108 https://www.wikidata.org/entity/Q46259534 db/journals/nar/nar46.html#BrozovicDDDFGLN18

Edwin Jacox Mathias Weller Eric Tannier Céline Scornavacca Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses. 980-987 2017 33 Bioinform. 7 https://doi.org/10.1093/bioinformatics/btw778 https://www.wikidata.org/entity/Q39028495 db/journals/bioinformatics/bioinformatics33.html#JacoxWTS17

François Chevenet Jean-Philippe Doyon Céline Scornavacca Edwin Jacox Emmanuelle Jousselin Vincent Berry SylvX: a viewer for phylogenetic tree reconciliations. 608-610 2016 32 Bioinform. 4 https://doi.org/10.1093/bioinformatics/btv625 https://www.wikidata.org/entity/Q46646719 db/journals/bioinformatics/bioinformatics32.html#ChevenetDSJJB16

Edwin Jacox Cédric Chauve Gergely J. Szöllosi Yann Ponty Céline Scornavacca ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony. 2056-2058 2016 32 Bioinform. 13 https://doi.org/10.1093/bioinformatics/btw105 https://www.wikidata.org/entity/Q39788032 db/journals/bioinformatics/bioinformatics32.html#JacoxCSPS16

Céline Scornavacca Edwin Jacox Gergely J. Szöllosi Joint amalgamation of most parsimonious reconciled gene trees. 841-848 2015 31 Bioinform. 6 https://doi.org/10.1093/bioinformatics/btu728 https://www.wikidata.org/entity/Q35233979 db/journals/bioinformatics/bioinformatics31.html#ScornavaccaJS15

Thu-Hien To Edwin Jacox Vincent Ranwez Céline Scornavacca A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality. 384:1-384:15 2015 16 BMC Bioinform. https://doi.org/10.1186/s12859-015-0803-x https://www.wikidata.org/entity/Q35843118 db/journals/bmcbi/bmcbi16.html#ToJRS15

Jens Lichtenberg Kyle Kurz Xiaoyu Liang Rami Al-ouran Lev Neiman Lee J. Nau Joshua D. Welch Edwin Jacox Thomas Bitterman Klaus Ecker Laura Elnitski Frank Drews Stephen Lee Lonnie R. Welch WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures. S6 2010 11 BMC Bioinform. S-12 https://doi.org/10.1186/1471-2105-11-S12-S6 https://www.wikidata.org/entity/Q33787356 db/journals/bmcbi/bmcbi11S.html#LichtenbergKLANNWJBEEDLW10

Jens Lichtenberg Edwin Jacox Mary Qu Yang Laura Elnitski Lonnie R. Welch Word-Based Characterization of the Bidirectional Promoters from the Human DNA-Repair Pathway. 29-33 2008 BIOCOMP conf/biocomp/2008 db/conf/biocomp/biocomp2008.html#LichtenbergJYEW08 Sameh Ben Aicha Rami Al-ouran Maelle Bellec Vincent Berry Thomas Bitterman C. Titus Brown Matija Brozovic Christian Cambillau Cédric Chauve François Chevenet Lionel A. Christiaen Christelle Dantec Justine Dardaillon Delphine Dauga Frédéric Delsuc Emmanuel J. P. Douzery Jean-Philippe Doyon Frank Drews Rémi Dumollard Klaus H. EckerKlaus Ecker Laura Elnitski Marie Fagotto Emmanuel Faure Mathieu Gineste Marion Guéroult-Bellone Maximilian Haeussler Emmanuelle Jousselin Kyle Kurz Takehiro Kusakabe Stephen Lee Patrick Lemaire Xiaoyu Liang Jens Lichtenberg Alexandra Louis Elijah K. Lowe Mickaël Mendez Kenta Nakai Lee J. Nau Magali Naville Lev Neiman Hiroki Nishida Kazuhiro R. Nitta Jacques Piette Yann Ponty Vincent Ranwez Wendy Reeves Alexis Roberge Yutaka Satou Céline Scornavacca Paul Simion Alberto Stolfi Billie J. Swalla Gergely J. Szöllosi Eric Tannier Thu-Hien To Michael Veeman Renaud Vincentelli Jean-Nicolas Volff Joshua D. Welch Lonnie R. Welch Mathias Weller Mary YangMary Qu Yang Rui Yokomori