Ensembl Genomes 2016: more genomes, more complexity.

Bert Overduin

Paul Julian Kersey James E. Allen Irina M. Armean Sanjay Boddu Bruce J. Bolt Denise Carvalho-Silva Mikkel B. Christensen Paul Davis 0001 Lee J. Falin Christoph Grabmueller Jay C. Humphrey Arnaud Kerhornou Julia Khobova Naveen K. Aranganathan Nicholas Langridge Ernesto Lowy-Gallego Mark D. McDowall Uma Maheswari Michael Nuhn Chuang Kee Ong Bert Overduin Michael Paulini Helder Pedro Emily Perry Giulietta Spudich Electra Tapanari Brandon Walts Gareth Williams Marcela K. Tello-Ruiz Joshua C. Stein Sharon Wei Doreen Ware Daniel M. Bolser Kevin L. Howe Eugene Kulesha Daniel Lawson Gareth Maslen Daniel M. Staines Ensembl Genomes 2016: more genomes, more complexity. 574-580 2016 44 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkv1209 https://www.wikidata.org/entity/Q36434816 db/journals/nar/nar44.html#KerseyAABBCCDFG16

Fiona Cunningham M. Ridwan Amode Daniel Barrell Kathryn Beal Konstantinos Billis Simon Brent Denise Carvalho-Silva Peter Clapham Guy Coates Stephen Fitzgerald Laurent Gil Carlos García-Girón Leo Gordon Thibaut Hourlier Sarah E. Hunt Sophie H. Janacek Nathan Johnson Thomas Juettemann Andreas K. Kähäri Stephen Keenan Fergal J. Martin Thomas Maurel William M. McLaren Daniel N. Murphy Rishi Nag Bert Overduin Anne Parker Mateus Patricio Emily Perry Miguel Pignatelli Harpreet Singh Riat Daniel Sheppard Kieron R. Taylor Anja Thormann Alessandro Vullo Steven P. Wilder Amonida Zadissa Bronwen L. Aken Ewan Birney Jennifer L. Harrow Rhoda Kinsella Matthieu Muffato Magali Ruffier Stephen M. J. Searle Giulietta Spudich Stephen J. Trevanion Andy Yates Daniel R. Zerbino Paul Flicek Ensembl 2015. 662-669 2015 43 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gku1010 https://www.wikidata.org/entity/Q29615570 db/journals/nar/nar43.html#CunninghamAB15

Paul Flicek M. Ridwan Amode Daniel Barrell Kathryn Beal Konstantinos Billis Simon Brent Denise Carvalho-Silva Peter Clapham Guy Coates Stephen Fitzgerald Laurent Gil Carlos García-Girón Leo Gordon Thibaut Hourlier Sarah E. Hunt Nathan Johnson Thomas Juettemann Andreas Kähäri Stephen Keenan Eugene Kulesha Fergal J. Martin Thomas Maurel William M. McLaren Daniel N. Murphy Rishi Nag Bert Overduin Miguel Pignatelli Bethan Pritchard Emily Pritchard Harpreet Singh Riat Magali Ruffier Daniel Sheppard Kieron R. Taylor Anja Thormann Stephen J. Trevanion Alessandro Vullo Steven P. Wilder Mark Wilson 0002 Amonida Zadissa Bronwen L. Aken Ewan Birney Fiona Cunningham Jennifer L. Harrow Javier Herrero Tim J. P. Hubbard Rhoda Kinsella Matthieu Muffato Anne Parker Giulietta Spudich Andy Yates Daniel R. Zerbino Stephen M. J. Searle Ensembl 2014. 749-755 2014 42 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkt1196 https://www.wikidata.org/entity/Q24567767 db/journals/nar/nar42.html#FlicekAB14

Paul Flicek Ikhlak Ahmed M. Ridwan Amode Daniel Barrell Kathryn Beal Simon Brent Denise Carvalho-Silva Peter Clapham Guy Coates Susan Fairley Stephen Fitzgerald Laurent Gil Carlos García-Girón Leo Gordon Thibaut Hourlier Sarah E. Hunt Thomas Juettemann Andreas Kähäri Stephen Keenan Monika Komorowska Eugene Kulesha Ian Longden Thomas Maurel William M. McLaren Matthieu Muffato Rishi Nag Bert Overduin Miguel Pignatelli Bethan Pritchard Emily Pritchard Harpreet Singh Riat Graham R. S. Ritchie Magali Ruffier Michael Schuster Daniel Sheppard Daniel Sobral Kieron R. Taylor Anja Thormann Stephen J. Trevanion Simon White Steven P. Wilder Bronwen L. Aken Ewan Birney Fiona Cunningham Ian Dunham Jennifer L. Harrow Javier Herrero Tim J. P. Hubbard Nathan Johnson Rhoda Kinsella Anne Parker Giulietta Spudich Andy Yates Amonida Zadissa Stephen M. J. Searle Ensembl 2013. 48-55 2013 41 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gks1236 https://www.wikidata.org/entity/Q28280494 db/journals/nar/nar41.html#FlicekAA13

Paul Flicek M. Ridwan Amode Daniel Barrell Kathryn Beal Simon Brent Denise Carvalho-Silva Peter Clapham Guy Coates Susan Fairley Stephen Fitzgerald Laurent Gil Leo Gordon Maurice Hendrix Thibaut Hourlier Nathan Johnson Andreas Kähäri Damian Keefe Stephen Keenan Rhoda Kinsella Monika Komorowska Gautier Koscielny Eugene Kulesha Pontus Larsson Ian Longden William M. McLaren Matthieu Muffato Bert Overduin Miguel Pignatelli Bethan Pritchard Harpreet Singh Riat Graham R. S. Ritchie Magali Ruffier Michael Schuster Daniel Sobral Y. Amy Tang Kieron R. Taylor Stephen J. Trevanion Jana Vandrovcova Simon White Mark Wilson 0002 Steven P. Wilder Bronwen L. Aken Ewan Birney Fiona Cunningham Ian Dunham Richard Durbin Xosé M. Fernández-Suárez Jennifer L. Harrow Javier Herrero Tim J. P. Hubbard Anne Parker Glenn Proctor Giulietta Spudich Jan Vogel Andy Yates Amonida Zadissa Stephen M. J. Searle Ensembl 2012. 84-90 2012 40 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkr991 https://www.wikidata.org/entity/Q28253062 db/journals/nar/nar40.html#FlicekAB12

Paul Flicek M. Ridwan Amode Daniel Barrell Kathryn Beal Simon Brent Yuan Chen 0007 Peter Clapham Guy Coates Susan Fairley Stephen Fitzgerald Leo Gordon Maurice Hendrix Thibaut Hourlier Nathan Johnson Andreas Kähäri Damian Keefe Stephen Keenan Rhoda Kinsella Felix Kokocinski Eugene Kulesha Pontus Larsson Ian Longden William M. McLaren Bert Overduin Bethan Pritchard Harpreet Singh Riat Daniel Rios Graham R. S. Ritchie Magali Ruffier Michael Schuster Daniel Sobral Giulietta Spudich Y. Amy Tang Stephen J. Trevanion Jana Vandrovcova Albert J. Vilella Simon White Steven P. Wilder Amonida Zadissa Jorge Zamora Bronwen L. Aken Ewan Birney Fiona Cunningham Ian Dunham Richard Durbin Xosé M. Fernández-Suárez Javier Herrero Tim J. P. Hubbard Anne Parker Glenn Proctor Jan Vogel Stephen M. J. Searle Ensembl 2011. 800-806 2011 39 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkq1064 https://www.wikidata.org/entity/Q24614810 db/journals/nar/nar39.html#FlicekAB11

Paul Flicek Bronwen L. Aken Benoît Ballester Kathryn Beal Eugene Bragin Simon Brent Yuan Chen 0007 Peter Clapham Guy Coates Susan Fairley Stephen Fitzgerald Julio Fernandez-Banet Leo Gordon Stefan Gräf Syed Haider Martin Hammond Kerstin Howe Andrew M. Jenkinson Nathan Johnson Andreas Kähäri Damian Keefe Stephen Keenan Rhoda Kinsella Felix Kokocinski Gautier Koscielny Eugene Kulesha Daniel Lawson Ian Longden Tim Massingham William M. McLaren Karine Megy Bert Overduin Bethan Pritchard Daniel Rios Magali Ruffier Michael Schuster Guy Slater Damian Smedley Giulietta Spudich Y. Amy Tang Stephen J. Trevanion Albert J. Vilella Jan Vogel Simon White Steven P. Wilder Amonida Zadissa Ewan Birney Fiona Cunningham Ian Dunham Richard Durbin Xosé M. Fernández-Suárez Javier Herrero Tim J. P. Hubbard Anne Parker Glenn Proctor James A. Smith Stephen M. J. Searle Ensembl's 10th year. 557-562 2010 38 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkp972 https://www.wikidata.org/entity/Q24643906 db/journals/nar/nar38.html#FlicekAB10

Tim J. P. Hubbard Bronwen L. Aken Sarah C. Ayling Benoît Ballester Kathryn Beal Eugene Bragin Simon Brent Yuan Chen 0007 Peter Clapham Laura Clarke Guy Coates Susan Fairley Stephen Fitzgerald Julio Fernandez-Banet Leo Gordon Stefan Gräf Syed Haider Martin Hammond Richard C. G. Holland Kevin L. Howe Andrew M. Jenkinson Nathan Johnson Andreas Kähäri Damian Keefe Stephen Keenan Rhoda Kinsella Felix Kokocinski Eugene Kulesha Daniel Lawson Ian Longden Karine Megy Patrick Meidl Bert Overduin Anne Parker Bethan Pritchard Daniel Rios Michael Schuster Guy Slater Damian Smedley William Spooner Giulietta Spudich Stephen J. Trevanion Albert J. Vilella Jan Vogel Simon White Steven P. Wilder Arek Zadissa Ewan Birney Fiona Cunningham Val Curwen Richard Durbin Xosé M. Fernández-Suárez Javier Herrero Arek Kasprzyk Glenn Proctor James A. Smith Stephen M. J. Searle Paul Flicek Ensembl 2009. 690-697 2009 37 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkn828 https://www.wikidata.org/entity/Q29614532 db/journals/nar/nar37.html#HubbardAA09

Paul Flicek Bronwen L. Aken Kathryn Beal Benoît Ballester Mario Cáccamo Yuan Chen 0007 Laura Clarke Guy Coates Fiona Cunningham Tim Cutts Thomas A. Down S. C. Dyer T. Eyre Stephen Fitzgerald Julio Fernandez-Banet Stefan Gräf Syed Haider Martin Hammond Richard C. G. Holland Kevin L. Howe Kerstin Howe Nathan Johnson Andrew M. Jenkinson Andreas Kähäri Damian Keefe Felix Kokocinski Eugene Kulesha Daniel Lawson Ian Longden Karine Megy Patrick Meidl Bert Overduin Anne Parker Bethan Pritchard Andreas Prlic S. Rice Daniel Rios Michael Schuster Ian Sealy Guy Slater Damian Smedley Giulietta Spudich Stephen J. Trevanion Albert J. Vilella Jan Vogel Simon White M. Wood Ewan Birney Tony Cox 0001 Val Curwen Richard Durbin Xosé M. Fernández-Suárez Javier Herrero Tim J. P. Hubbard Arek Kasprzyk Glenn Proctor James A. Smith Abel Ureta-Vidal Stephen M. J. Searle Ensembl 2008. 707-714 2008 36 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkm988 https://www.wikidata.org/entity/Q22065975 db/journals/nar/nar36.html#FlicekAB08

Tim J. P. Hubbard Bronwen L. Aken Kathryn Beal Benoît Ballester Mario Cáccamo Yuan Chen 0007 Laura Clarke Guy Coates Fiona Cunningham Tim Cutts Thomas A. Down S. C. Dyer Stephen Fitzgerald Julio Fernandez-Banet Stefan Gräf Syed Haider Martin Hammond Javier Herrero Richard C. G. Holland Kevin L. Howe Kerstin Howe Nathan Johnson Andreas Kähäri Damian Keefe Felix Kokocinski Eugene Kulesha Daniel Lawson Ian Longden Craig Melsopp Karine Megy Patrick Meidl Bert Overduin Anne Parker Andreas Prlic S. Rice Daniel Rios Michael Schuster Ian Sealy Jessica Severin Guy Slater Damian Smedley Giulietta Spudich Stephen J. Trevanion Albert J. Vilella Jan Vogel Simon White M. Wood Tony Cox 0001 Val Curwen Richard Durbin Xosé M. Fernández-Suárez Paul Flicek Arek Kasprzyk Glenn Proctor Stephen M. J. Searle James A. Smith Abel Ureta-Vidal Ewan Birney Ensembl 2007. 610-617 2007 35 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkl996 https://www.wikidata.org/entity/Q24669862 db/journals/nar/nar35.html#HubbardAB07

Ewan Birney T. Daniel Andrews Mario Cáccamo Yuan Chen 0007 Laura Clarke Guy Coates Tony Cox 0001 Fiona Cunningham Val Curwen Tim Cutts Thomas A. Down Richard Durbin Xosé M. Fernández-Suárez Paul Flicek Stefan Gräf Martin Hammond Javier Herrero Kevin L. Howe Vivek Iyer Kerstin Jekosch Andreas Kähäri Arek Kasprzyk Damian Keefe Felix Kokocinski Eugene Kulesha D. London Ian Longden Craig Melsopp Patrick Meidl Bert Overduin Anne Parker Glenn Proctor Andreas Prlic Mark Rae Daniel Rios Seth Redmond Michael Schuster Ian Sealy Stephen M. J. Searle Jessica Severin Guy Slater Damian Smedley James A. Smith Arne Stabenau Jim Stalker Stephen J. Trevanion Abel Ureta-Vidal Jan Vogel Simon White Cara Woodwark Tim J. P. Hubbard Ensembl 2006. 556-561 2006 34 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkj133 https://www.wikidata.org/entity/Q25256782 db/journals/nar/nar34.html#BirneyAC06

Ikhlak Ahmed Bronwen L. Aken James E. Allen M. Ridwan Amode T. Daniel Andrews Naveen K. Aranganathan Irina M. Armean Sarah C. Ayling Benoît Ballester Daniel Barrell Kathryn Beal Konstantinos Billis Ewan Birney Sanjay Boddu Dan M. BolserDaniel M. Bolser Bruce J. Bolt Eugene Bragin Simon Brent Mario Cáccamo Denise Carvalho-Silva Yuan Chen 0007 Mikkel B. Christensen Peter Clapham Laura Clarke Guy Coates Tony Cox 0001 Fiona Cunningham Val Curwen Tim Cutts Paul Davis 0001 Thomas A. Down Ian Dunham Richard Durbin S. C. Dyer T. Eyre Susan Fairley Lee J. Falin Xosé M. FernándezXosé M. Fernández-Suárez Julio Fernandez-Banet Stephen Fitzgerald Paul Flicek Carlos García-Girón Laurent Gil Leo Gordon Christoph Grabmueller Stefan Gräf Syed Haider Martin Hammond Jennifer L. Harrow Maurice Hendrix Javier Herrero Richard C. G. Holland Thibaut Hourlier Kerstin HoweKerstin Jekosch Kevin L. Howe Tim J. P. Hubbard Jay C. Humphrey Sarah E. Hunt Vivek Iyer Sophie H. Janacek Andrew M. Jenkinson Nathan Johnson Thomas Juettemann Andreas KähäriAndreas K. Kähäri Arek Kasprzyk Damian Keefe Stephen Keenan Arnaud Kerhornou Paul J. KerseyPaul Julian Kersey Julia Khobova Rhoda Kinsella Felix Kokocinski Monika Komorowska Gautier Koscielny Eugene Kulesha Nicholas Langridge Pontus Larsson Daniel Lawson D. London Ian Longden Ernesto Lowy-Gallego Uma Maheswari Fergal J. Martin Gareth Maslen Tim Massingham Thomas Maurel Mark D. McDowall William M. McLaren Karyn MegyKarine Megy Patrick Meidl Craig Melsopp Matthieu Muffato Daniel N. Murphy Rishi Nag Michael Nuhn Chuang Kee Ong Anne Parker Mateus Patricio Michael Paulini Helder Pedro Emily PerryEmily Pritchard Miguel Pignatelli Andreas Prlic Glenn Proctor Mark Rae Seth Redmond Harpreet Singh Riat S. Rice Daniel Rios Graham R. S. Ritchie Magali Ruffier Michael Schuster Ian Sealy Stephen M. J. Searle Jessica Severin Daniel Sheppard Guy Slater Damian Smedley James A. Smith Daniel Sobral William Spooner Giulietta Spudich Arne Stabenau Daniel M. Staines Jim Stalker Joshua C. Stein Y. Amy Tang Electra Tapanari Kieron R. Taylor Marcela K. Tello-Ruiz Anja Thormann Stephen J. Trevanion Abel Ureta-Vidal Jana Vandrovcova Albert J. Vilella Jan Vogel Alessandro Vullo Brandon Walts Doreen Ware Sharon Wei Simon White Steven P. Wilder Gareth Williams Mark Wilson 0002 M. Wood Cara Woodwark Andy Yates Bethan YatesBethan Pritchard Amonida Zadissa Arek Zadissa Jorge Zamora Daniel R. Zerbino