GOFlowLLM - curating miRNA literature with large language models and flowcharts.

Nancy Ontiveros-Palacios

Andrew Green 0001 Nancy Ontiveros-Palacios Isaac Jandalala Simona Panni Valerie Wood Giulia Antonazzo Helen Attrill Alex Bateman Blake A. Sweeney GOFlowLLM - curating miRNA literature with large language models and flowcharts. 2026 42 Bioinform. 1 https://doi.org/10.1093/bioinformatics/btaf683 db/journals/bioinformatics/bioinformatics42.html#0001OJPWAABS26

Andrew Green 0001 Carlos Eduardo Ribas Nancy Ontiveros-Palacios Sam Griffiths-Jones Anton I. Petrov Alex Bateman Blake A. Sweeney LitSumm: large language models for literature summarization of noncoding RNAs. 2025 2025 Database J. Biol. Databases Curation https://doi.org/10.1093/database/baaf006 db/journals/biodb/biodb2025.html#GreenROGPBS25 streams/journals/biodb

Sandra Triebel Kevin Lamkiewicz Nancy Ontiveros-Palacios Blake A. Sweeney Peter F. Stadler Anton I. Petrov Michael Niepmann Manja Marz Comprehensive survey of conserved RNA secondary structures in full-genome alignment of Hepatitis C virus - Supplementary Files. Zenodo 2024 July https://doi.org/10.5281/zenodo.17294388 streams/repo/zenodo

Andrew Green 0001 Carlos Eduardo Ribas Nancy Ontiveros-Palacios Anton I. Petrov Alex Bateman Blake A. Sweeney LitSumm: Large language models for literature summarisation of non-coding RNAs. 2023 abs/2311.03056 CoRR https://doi.org/10.48550/arXiv.2311.03056 db/journals/corr/corr2311.html#abs-2311-03056

Franziska Hufsky Kevin Lamkiewicz Alexandre Almeida Abdel Aouacheria Cecilia N. Arighi Alex Bateman Jan Baumbach Niko Beerenwinkel Christian Brandt Marco Cacciabue Sara Chuguransky Oliver Drechsel Robert D. Finn Adrian Fritz Stephan Fuchs Georges Hattab Anne-Christin Hauschild Dominik Heider Marie Hoffmann Martin Hölzer Stefan Hoops Lars Kaderali Ioanna Kalvari Max von Kleist Renó Kmiecinski Denise Kühnert Gorka Lasso Pieter Libin Markus List Hannah F. Löchel Maria Jesus Martin Roman Martin Julian O. Matschinske Alice C. McHardy Pedro Mendes 0001 Jaina Mistry Vincent Navratil Eric P. Nawrocki Áine Niamh O'toole Nancy Ontiveros-Palacios Anton I. Petrov Guillermo Rangel-Pineros Nicole Redaschi Susanne Reimering Knut Reinert Alejandro Reyes Lorna J. Richardson David L. Robertson Sepideh Sadegh Joshua B. Singer Kristof Theys Chris Upton Marius Welzel Lowri Williams Manja Marz Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. 642-663 2021 22 Briefings Bioinform. 2 https://doi.org/10.1093/bib/bbaa232 https://www.wikidata.org/entity/Q101222862 db/journals/bib/bib22.html#HufskyLAAABBBBC21

Ioanna Kalvari Eric P. Nawrocki Nancy Ontiveros-Palacios Joanna Argasinska Kevin Lamkiewicz Manja Marz Sam Griffiths-Jones Claire Toffano-Nioche Daniel Gautheret Zasha Weinberg Elena Rivas Sean R. Eddy Robert D. Finn Alex Bateman Anton I. Petrov Rfam 14: expanded coverage of metagenomic, viral and microRNA families. D192-D200 2021 49 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkaa1047 https://www.wikidata.org/entity/Q102205714 db/journals/nar/nar49.html#KalvariNOALMGTG21

Alexandre Almeida Giulia Antonazzo Abdel Aouacheria Joanna Argasinska Cecilia N. Arighi Helen Attrill Alex Bateman Jan Baumbach Niko Beerenwinkel Christian Brandt Marco Cacciabue Sara Chuguransky Oliver Drechsel Sean R. Eddy Robert D. Finn Adrian Fritz Stephan Fuchs Daniel Gautheret Andrew Green 0001 Sam Griffiths-Jones Georges Hattab Anne-Christin Hauschild Dominik Heider Marie Hoffmann Martin Hölzer Stefan Hoops Franziska Hufsky Isaac Jandalala Lars Kaderali Ioanna Kalvari Max von Kleist Renó Kmiecinski Denise Kühnert Kevin Lamkiewicz Gorka Lasso Pieter Libin Markus List Hannah F. Löchel Maria Jesus Martin Roman Martin Manja Marz Julian O. Matschinske Alice C. McHardy Pedro Mendes 0001 Jaina Mistry Vincent Navratil Eric P. Nawrocki Michael Niepmann Áine Niamh O'toole Simona Panni Anton I. Petrov Guillermo Rangel-Pineros Nicole Redaschi Susanne Reimering Knut Reinert Alejandro Reyes Carlos Eduardo Ribas Lorna J. Richardson Elena Rivas David L. Robertson Sepideh Sadegh Joshua B. Singer Peter F. Stadler Blake A. Sweeney Kristof Theys Claire Toffano-Nioche Sandra Triebel Chris Upton Zasha Weinberg Marius Welzel Lowri Williams Valerie Wood