Public data and open source tools for multi-assay genomic investigation of disease.

Lavanya Kannan

Lavanya Kannan Marcel Ramos Angela Re Nehme Hachem Zhaleh Safikhani Deena M. A. Gendoo Sean Davis 0001 David Gomez-Cabrero Robert Castelo Kasper D. Hansen Vincent J. Carey Martin Morgan Aedín C. Culhane Benjamin Haibe-Kains Levi Waldron Public data and open source tools for multi-assay genomic investigation of disease. 603-615 2016 17 Briefings Bioinform. 4 https://doi.org/10.1093/bib/bbv080 https://www.wikidata.org/entity/Q28596241 db/journals/bib/bib17.html#KannanRRHSGDGCH16

Partha Sarathi Roy 0002 Mukunda Dev Behera M. S. R. Murthy Arijit Roy Sarnam Singh S. P. S. Kushwaha Chandra Shekhar Jha Singuluri Sudhakar Pawan K. Joshi Chintala Sudhakar Reddy Stutee Gupta Girish Pujar C. B. S. Dutt Vijay K. Srivastava M. C. Porwal Poonam Tripathi Jamuna S. Singh Vishwas Chitale Andrew K. Skidmore G. Rajshekhar Deepak Kushwaha Harish Chandra Karnatak Sameer Saran Giriraj Amarnath Hitendra Padalia Manish P. Kale Subrato Nandy Jeganathan Chockalingam Chandra Prakash Singh C. M. Biradar Chiranjibi Pattanaik D. K. Singh G. M. Devagiri Gautam Talukdar Rabindra K. Panigrahy Harnam Singh J. R. Sharma K. Haridasan Shivam Trived K. P. Singh Lavanya Kannan M. Daniel M. K. Misra Madhura Niphadkar Nidhi Nagabhatla Nupoor Prasad O. P. Tripathi P. Rama Chandra Prasad Pushpa Dash Qamer Qureshi S. K. Tripathi B. R. Ramesh Balakrishnan Gowda Sanjay Tomar Shakil Ahmad Romshoo Shilpa Giriraj Shirish A. Ravan Soumit Kumar Behera Subrato Paul Ashesh Kumar Das B. K. Ranganath T. P. Singh T. R. Sahu Uma Shankar A. R. R. Menon Gaurav Srivastava 0010 Neeti Subrat Sharma U. B. Mohapatra Ashok Peddi Humayun Rashid Irfan Salroo P. Hari Krishna P. K. Hajra A. O. Vergheese Shafique Matin Swapnil A. Chaudhary Sonali Ghosh Udaya Lakshmi Deepshikha Rawat Kalpana Ambastha Akhtar H. Malik B. S. S. Devi Balakrishna Gowda K. C. Sharma Prashant Mukharjee Ajay Sharma Priya Davidar R. R. Venkata Raju S. S. Katewa Shashi Kant Vatsavaya S. Raju B. P. Uniyal Bijan Debnath D. K. Rout Rajesh Thapa Shijo Joseph Pradeep Chhetri Reshma M. Ramachandran New vegetation type map of India prepared using satellite remote sensing: Comparison with global vegetation maps and utilities. 142-159 2015 39 Int. J. Appl. Earth Obs. Geoinformation https://doi.org/10.1016/j.jag.2015.03.003 https://www.wikidata.org/entity/Q58321874 db/journals/aeog/aeog39.html#RoyBMRSKJSJRGPD15

Lavanya Kannan Ward C. Wheeler Exactly Computing the Parsimony Scores on Phylogenetic Networks Using Dynamic Programming. 303-319 2014 21 J. Comput. Biol. 4 https://doi.org/10.1089/cmb.2013.0134 https://www.wikidata.org/entity/Q35100066 db/journals/jcb/jcb21.html#KannanW14

Lavanya Kannan Ward C. Wheeler Maximum Parsimony on Phylogenetic networks. 9 2012 7 Algorithms Mol. Biol. https://doi.org/10.1186/1748-7188-7-9 https://www.wikidata.org/entity/Q34253663 db/journals/almob/almob7.html#KannanW12

Lavanya Kannan Hua Li Arcady R. Mushegian A Polynomial-Time Algorithm Computing Lower and Upper Bounds of the Rooted Subtree Prune and Regraft Distance. 743-757 2011 18 J. Comput. Biol. 5 https://doi.org/10.1089/cmb.2010.0045 https://www.wikidata.org/entity/Q51623844 db/journals/jcb/jcb18.html#KannanLM11

David M. Kristensen Lavanya Kannan Michael K. Coleman Yuri I. Wolf Alexander Sorokin Eugene V. Koonin Arcady R. Mushegian A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches. 1481-1487 2010 26 Bioinform. 12 https://doi.org/10.1093/bioinformatics/btq229 https://www.wikidata.org/entity/Q28751717 db/journals/bioinformatics/bioinformatics26.html#KristensenKCWSKM10

Arthur M. Hobbs Lavanya Kannan Hong-Jian Lai Hongyuan Lai Guoqing Weng Balanced and 1-balanced graph constructions. 1511-1523 2010 158 Discret. Appl. Math. 14 https://doi.org/10.1016/j.dam.2010.05.004 db/journals/dam/dam158.html#HobbsKLLW10

Lavanya Kannan Arthur M. Hobbs Hong-Jian Lai Hongyuan Lai Transforming a graph into a 1-balanced graph. 300-308 2009 157 Discret. Appl. Math. 2 https://doi.org/10.1016/j.dam.2008.03.012 db/journals/dam/dam157.html#KannanHLL09

Giriraj Amarnath Kalpana Ambastha Mukunda Dev Behera Soumit Kumar Behera C. M. Biradar Vincent CareyVincent J. Carey Robert Castelo Swapnil A. Chaudhary Pradeep Chhetri Vishwas Chitale Jeganathan Chockalingam Michael K. Coleman Aedín C. Culhane M. Daniel Ashesh Kumar Das Pushpa Dash Priya Davidar Sean R. DavisSean Davis 0001 Bijan Debnath G. M. Devagiri B. S. S. Devi C. B. S. Dutt Deena M. A. Gendoo Sonali Ghosh Shilpa Giriraj David Gomez-Cabrero Balakrishna Gowda Balakrishnan Gowda Stutee Gupta Nehme Hachem Benjamin Haibe-Kains P. K. Hajra Kasper D. Hansen K. Haridasan Arthur M. Hobbs Chandra Shekhar Jha Shijo Joseph Pawan Kumar JoshiPawan K. Joshi Manish P. Kale Shashi Kant Harish Chandra Karnatak S. S. Katewa Eugene V. Koonin P. Hari Krishna David M. Kristensen Deepak Kushwaha S. P. S. Kushwaha Hong-Jian Lai Hongyuan Lai Udaya Lakshmi Hua Li Akhtar H. Malik Shafique Matin A. R. R. Menon M. K. Misra U. B. Mohapatra Martin Morgan Prashant Mukharjee M. S. R. Murthy Arcady R. Mushegian Nidhi Nagabhatla Subrato Nandy Neeti Madhura Niphadkar Hitendra Padalia Rabindra K. Panigrahy Chiranjibi Pattanaik Subrato Paul Ashok Peddi M. C. Porwal Nupoor Prasad P. Rama Chandra Prasad Girish Pujar Qamer Qureshi G. Rajshekhar R. R. Venkata Raju Vatsavaya S. Raju Reshma M. Ramachandran B. R. Ramesh Marcel Ramos B. K. Ranganath Humayun Rashid Shirish A. Ravan Deepshikha Rawat Angela Re Chintala Sudhakar Reddy Shakil Ahmad Romshoo D. K. Rout Arijit Roy Partha Sarathi Roy 0002 Zhaleh Safikhani T. R. Sahu Irfan Salroo Sameer Saran Uma Shankar Ajay Sharma J. R. Sharma K. C. Sharma Subrat Sharma Chandra Prakash Singh D. K. Singh Harnam Singh Jamuna S. Singh K. P. Singh Sarnam Singh T. P. Singh Andrew K. Skidmore Alexander Sorokin Gaurav Srivastava 0010 Vijay K. Srivastava Singuluri Sudhakar Gautam Talukdar Rajesh Thapa Sanjay Tomar O. P. Tripathi Poonam Tripathi S. K. Tripathi Shivam Trived B. P. Uniyal A. O. Vergheese Levi Waldron Guoqing Weng Ward C. Wheeler Yuri I. Wolf