The Brain Tumor Segmentation (BraTS) Challenge 2023: Local Synthesis of Healthy Brain Tissue via Inpainting.

Arash Nazeri

Florian Kofler Felix Meissen Felix Steinbauer Robert Graf Eva Oswald Ezequiel de la Rosa Hongwei Bran Li Ujjwal Baid Florian A. Hölzl Özgün Turgut Izabela Horvath Diana Waldmannstetter Christina Bukas Maruf Adewole Syed Muhammad Anwar Anastasia Janas Anahita Fathi Kazerooni Dominic LaBella Ahmed W. Moawad Keyvan Farahani James A. Eddy Timothy Bergquist Verena Chung Russell Takeshi Shinohara Farouk Dako Walter I. Wiggins Zachary Reitman Chunhao Wang Xinyang Liu Zhifan Jiang Ariana Familiar Gian Marco Conte Elaine Johanson Zeke Meier Christos Davatzikos John B. Freymann Justin S. Kirby Michel Bilello Hassan M. Fathallah-Shaykh Roland Wiest Jan Kirschke Rivka R. Colen Aikaterini Kotrotsou Pamela LaMontagne Daniel S. Marcus Mikhail Milchenko Arash Nazeri Marc-André Weber Abhishek Mahajan Suyash Mohan John Mongan Christopher Hess Soonmee Cha Javier E. Villanueva-Meyer Errol Colak Priscila Crivellaro András Jakab Jake Albrecht Udunna Anazodo Mariam Aboian Juan Eugenio Iglesias Koen Van Leemput Spyridon Bakas Daniel Rueckert Benedikt Wiestler Ivan Ezhov Marie Piraud Bjoern H. Menze The Brain Tumor Segmentation (BraTS) Challenge 2023: Local Synthesis of Healthy Brain Tissue via Inpainting. 2023 abs/2305.08992 CoRR https://doi.org/10.48550/arXiv.2305.08992 db/journals/corr/corr2305.html#abs-2305-08992

Hongwei Bran Li Gian Marco Conte Syed Muhammad Anwar Florian Kofler Koen Van Leemput Marie Piraud Ivan Ezhov Felix Meissen Maruf Adewole Anastasia Janas Anahita Fathi Kazerooni Dominic LaBella Ahmed W. Moawad Keyvan Farahani James A. Eddy Timothy Bergquist Verena Chung Russell Takeshi Shinohara Farouk Dako Walter I. Wiggins Zachary Reitman Chunhao Wang Xinyang Liu Zhifan Jiang Ariana Familiar Elaine Johanson Zeke Meier Christos Davatzikos John B. Freymann Justin S. Kirby Michel Bilello Hassan M. Fathallah-Shaykh Roland Wiest Jan Kirschke Rivka R. Colen Aikaterini Kotrotsou Pamela LaMontagne Daniel S. Marcus Mikhail Milchenko Arash Nazeri Marc-André Weber Abhishek Mahajan Suyash Mohan John Mongan Christopher Hess Soonmee Cha Javier E. Villanueva-Meyer Errol Colak Priscila Crivellaro András Jakab Jake Albrecht Udunna Anazodo Mariam Aboian Thomas Yu Ujjwal Baid Spyridon Bakas Marius George Linguraru Bjoern H. Menze Juan Eugenio Iglesias Benedikt Wiestler The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn). 2023 abs/2305.09011 CoRR https://doi.org/10.48550/arXiv.2305.09011 db/journals/corr/corr2305.html#abs-2305-09011

Christin Schifani Colin Hawco Arash Nazeri Aristotle N. Voineskos Relationship of neurite architecture to brain activity during task-based fMRI. 119575 2022 262 NeuroImage https://doi.org/10.1016/j.neuroimage.2022.119575 https://www.wikidata.org/entity/Q114662187 db/journals/neuroimage/neuroimage262.html#SchifaniHNV22

Sarthak Pati Ujjwal Baid Maximilian Zenk Brandon Edwards Micah J. Sheller G. Anthony Reina Patrick Foley Alexey Gruzdev Jason Martin Shadi Albarqouni Yong Chen 0016 Russell Taki Shinohara Annika Reinke David Zimmerer John B. Freymann Justin S. Kirby Christos Davatzikos Rivka R. Colen Aikaterini Kotrotsou Daniel S. Marcus Mikhail Milchenko Arash Nazeri Hassan M. Fathallah-Shaykh Roland Wiest András Jakab Marc-André Weber Abhishek Mahajan Lena Maier-Hein Jens Kleesiek Bjoern H. Menze Klaus H. Maier-Hein Spyridon Bakas The Federated Tumor Segmentation (FeTS) Challenge. 2021 abs/2105.05874 CoRR https://arxiv.org/abs/2105.05874 db/journals/corr/corr2105.html#abs-2105-05874

Ujjwal Baid Satyam Ghodasara Michel Bilello Suyash Mohan Evan Calabrese Errol Colak Keyvan Farahani Jayashree Kalpathy-Cramer Felipe C. Kitamura Sarthak Pati Luciano M. Prevedello Jeffrey D. Rudie Chiharu Sako Russell T. Shinohara Timothy Bergquist Rong Chai James A. Eddy Julia Elliott Walter Reade Thomas Schaffter Thomas Yu Jiaxin Zheng BraTS Annotators Christos Davatzikos John Mongan Christopher Hess Soonmee Cha Javier E. Villanueva-Meyer John B. Freymann Justin S. Kirby Benedikt Wiestler Priscila Crivellaro Rivka R. Colen Aikaterini Kotrotsou Daniel S. Marcus Mikhail Milchenko Arash Nazeri Hassan M. Fathallah-Shaykh Roland Wiest András Jakab Marc-André Weber Abhishek Mahajan Bjoern H. Menze Adam E. Flanders Spyridon Bakas The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification. 2021 abs/2107.02314 CoRR https://arxiv.org/abs/2107.02314 db/journals/corr/corr2107.html#abs-2107-02314

Raghav Mehta Angelos Filos Ujjwal Baid Chiharu Sako Richard McKinley Michael Rebsamen Katrin Dätwyler Raphael Meier Piotr Radojewski Gowtham Krishnan Murugesan Sahil S. Nalawade Chandan Ganesh Benjamin C. Wagner Fang F. Yu Baowei Fei Ananth J. Madhuranthakam Joseph A. Maldjian Laura Alexandra Daza Catalina Gómez Caballero Pablo Arbeláez Chengliang Dai Shuo Wang 0011 Hadrien Raynaud Yuanhan Mo Elsa D. Angelini Yike Guo Wenjia Bai Subhashis Banerjee Linmin Pei Murat Ak Sarahi Rosas-González Ilyess Zemmoura Clovis Tauber Minh H. Vu Tufve Nyholm Tommy Löfstedt Laura Mora Ballestar Verónica Vilaplana Hugh McHugh Gonzalo D. Maso Talou Alan Wang Jay B. Patel Ken Chang Katharina Hoebel Mishka Gidwani Nishanth Thumbavanam Arun Sharut Gupta Mehak Aggarwal Praveer Singh Elizabeth R. Gerstner Jayashree Kalpathy-Cramer Nicolas Boutry Alexis Huard Lasitha Vidyaratne Md Monibor Rahman Khan M. Iftekharuddin Joseph Chazalon Élodie Puybareau Guillaume Tochon Jun Ma 0016 Mariano Cabezas Xavier Lladó Arnau Oliver Liliana Valencia Sergi Valverde Mehdi Amian Mohammadreza Soltaninejad Andriy Myronenko Ali Hatamizadeh Xue Feng 0001 Quan Dou Nicholas J. Tustison Craig H. Meyer Nisarg A. Shah Sanjay N. Talbar Marc-André Weber Abhishek Mahajan András Jakab Roland Wiest Hassan M. Fathallah-Shaykh Arash Nazeri Mikhail Milchenko Daniel S. Marcus Aikaterini Kotrotsou Rivka Colen John B. Freymann Justin S. Kirby Christos Davatzikos Bjoern H. Menze Spyridon Bakas Yarin Gal Tal Arbel QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Metrics and Benchmarking Results. 2021 abs/2112.10074 CoRR https://arxiv.org/abs/2112.10074 db/journals/corr/corr2112.html#abs-2112-10074

Siddhesh P. Thakur Jimit Doshi Sarthak Pati Saima Rathore Chiharu Sako Michel Bilello Sung Min Ha Gaurav Shukla Adam E. Flanders Aikaterini Kotrotsou Mikhail Milchenko Spencer Liem Gregory S. Alexander Joseph Lombardo Joshua D. Palmer Pamela LaMontagne Arash Nazeri Sanjay N. Talbar Spyridon Bakas Brain extraction on MRI scans in presence of diffuse glioma: Multi-institutional performance evaluation of deep learning methods and robust modality-agnostic training. 117081 2020 220 NeuroImage https://doi.org/10.1016/j.neuroimage.2020.117081 https://www.wikidata.org/entity/Q96829812 db/journals/neuroimage/neuroimage220.html#ThakurDPRSBHSFK20

Spyridon Bakas Mauricio Reyes 0001 András Jakab Stefan Bauer Markus Rempfler Alessandro Crimi Russell Takeshi Shinohara Christoph Berger Sung Min Ha Martin Rozycki Marcel Prastawa Esther Alberts Jana Lipková John B. Freymann Justin S. Kirby Michel Bilello Hassan M. Fathallah-Shaykh Roland Wiest Jan Kirschke Benedikt Wiestler Rivka R. Colen Aikaterini Kotrotsou Pamela LaMontagne Daniel S. Marcus Mikhail Milchenko Arash Nazeri Marc-André Weber Abhishek Mahajan Ujjwal Baid Dongjin Kwon Manu Agarwal Mahbubul Alam Alberto Albiol Antonio Albiol Alex Varghese Tran Anh Tuan 0001 Tal Arbel Aaron Avery Pranjal B. Subhashis Banerjee Thomas Batchelder Kayhan N. Batmanghelich Enzo Battistella Martin Bendszus Eze Benson José Bernal George Biros Mariano Cabezas Siddhartha Chandra Yi-Ju Chang et al. Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge. 2018 abs/1811.02629 CoRR http://arxiv.org/abs/1811.02629 db/journals/corr/corr1811.html#abs-1811-02629

Arash Nazeri Habib Ganjgahi Tina Roostaei Thomas E. Nichols Mojtaba Zarei Imaging proteomics for diagnosis, monitoring and prediction of Alzheimer's disease. 657-665 2014 102 NeuroImage https://doi.org/10.1016/j.neuroimage.2014.08.041 https://www.wikidata.org/entity/Q34436072 db/journals/neuroimage/neuroimage102.html#NazeriGRNZ14

Mariam Aboian Maruf Adewole Manu Agarwal Mehak Aggarwal Murat Ak et al. Mahbubul Alam Shadi Albarqouni Esther Alberts Alberto Albiol Antonio Albiol Jake Albrecht Gregory S. Alexander Mehdi Amian Udunna Anazodo Elsa D. Angelini BraTS Annotators Syed Muhammad Anwar Tal Arbel Pablo Andrés ArbeláezPablo Arbeláez Nishanth Thumbavanam Arun Aaron Avery Pranjal B. Wenjia Bai Ujjwal Baid Spyridon Bakas Laura Mora Ballestar Subhashis Banerjee Thomas Batchelder Kayhan BatmanghelichKayhan N. Batmanghelich Enzo Battistella Stefan Bauer Martin Bendszus Eze Benson Christoph Berger Timothy Bergquist José Bernal Michel Bilello George Biros Nicolas Boutry Christina Bukas Catalina Gómez Caballero Mariano Cabezas Evan Calabrese Soonmee Cha Rong Chai Siddhartha Chandra Ken Chang Yi-Ju Chang Joseph Chazalon Yong Chen 0016 Verena Chung Errol Colak Rivka Colen Rivka R. Colen Gian Marco Conte Alessandro Crimi Priscila Crivellaro Katrin DaetwylerKatrin Dätwyler Chengliang Dai Farouk Dako Christos Davatzikos Laura Alexandra Daza Jimit Doshi Quan Dou James A. Eddy Brandon Edwards Julia Elliott Ivan Ezhov Ariana Familiar Keyvan Farahani Hassan M. Fathallah-Shaykh Baowei Fei Xue Feng 0001 Angelos Filos Adam E. Flanders Patrick Foley John B. Freymann Yarin Gal Chandan Ganesh Habib Ganjgahi Elizabeth R. Gerstner Satyam Ghodasara Mishka Gidwani Robert Graf Alexey Gruzdev Yike Guo Sharut Gupta Sung Min Ha Ali Hatamizadeh Colin Hawco Christopher Hess Katharina HöbelKatharina Hoebel Florian A. Hölzl Izabela Horvath Alexis Huard Khan M. Iftekharuddin Juan Eugenio Iglesias András Jakab Anastasia Janas Zhifan Jiang Elaine Johanson Jayashree Kalpathy-Cramer Anahita Fathi Kazerooni Justin S. Kirby Jan Kirschke Felipe KitamuraFelipe C. Kitamura Jens Kleesiek Florian Kofler Aikaterini Kotrotsou Dongjin Kwon Dominic LaBella Pamela LaMontagne Koenraad Van LeemputKoen Van Leemput Hongwei Li 0004Hongwei Bran Li Spencer Liem Marius George Linguraru Jana Lipková Xinyang Liu Xavier Lladó Tommy Löfstedt Joseph Lombardo Jun Ma 0016 Ananth J. Madhuranthakam Abhishek Mahajan Klaus H. Maier-Hein Lena Maier-Hein Joseph A. Maldjian Daniel S. Marcus Jason Martin Hugh McHugh Richard McKinley Raghav Mehta Raphael Meier Zeke Meier Felix Meissen Bjoern H. Menze Craig H. Meyer Mikhail Milchenko Yuanhan Mo Ahmed W. Moawad Suyash Mohan John Mongan Gowtham MurugesanGowtham Krishnan Murugesan Andriy Myronenko Sahil S. Nalawade Thomas E. Nichols Tufve Nyholm Arnau Oliver Eva Oswald Joshua D. Palmer Jay B. Patel Sarthak Pati Linmin Pei Marie Piraud Marcel Prastawa Luciano M. Prevedello Élodie Puybareau Piotr Radojewski Md Monibor Rahman Saima Rathore Hadrien Raynaud Walter Reade Michael Rebsamen G. Anthony Reina Annika Reinke Zachary Reitman Markus Rempfler Mauricio Reyes 0001 Tina Roostaei Ezequiel de la Rosa Sarahi Rosas-González Martin Rozycki Jeffrey D. Rudie Daniel Rueckert Chiharu Sako Thomas Schaffter Christin Schifani Nisarg A. Shah Micah J. Sheller Russell T. ShinoharaRussell Taki ShinoharaRussell Takeshi Shinohara Gaurav Shukla Praveer Singh Mohammadreza Soltaninejad Felix Steinbauer Sanjay N. Talbar Gonzalo D. Maso Talou Clovis Tauber Siddhesh P. Thakur Guillaume Tochon Tran Anh Tuan 0001 Özgün Turgut Nicholas J. Tustison Liliana Valencia Sergi Valverde Alex Varghese Lasitha Vidyaratne Verónica Vilaplana Javier E. Villanueva-Meyer Aristotle N. Voineskos Minh H. Vu Benjamin C. Wagner Diana Waldmannstetter Alan Wang Chunhao Wang Shuo Wang 0011 Marc-André Weber Roland Wiest Benedikt Wiestler Walter I. Wiggins Fang F. Yu Thomas Yu Mojtaba Zarei Ilyess Zemmoura Maximilian Zenk Jiaxin Zheng David Zimmerer