3D Transcranial Dynamic Ultrasound Localization Microscopy in the Mouse Brain Using a Row-Column Array.

Jonathan Porée https://orcid.org/0000-0002-4179-9264

Alice Wu Jonathan Porée Gerardo Ramos-Palacios Nin Ghigo Chloé Bourquin Alexis Leconte Paul Xing Abbas F. Sadikot Michael Chassé Jean Provost 3D Transcranial Dynamic Ultrasound Localization Microscopy in the Mouse Brain Using a Row-Column Array. 2026 March 1112-1123 73 IEEE Trans. Biomed. Eng. 3 https://doi.org/10.1109/TBME.2025.3598693 db/journals/tbe/tbe73.html#WuPRGBLXSCP26 streams/journals/tbe

Brice Rauby Paul Xing Jonathan Porée Maxime Gasse Jean Provost Pruning Sparse Tensor Neural Networks Enables Deep Learning for 3D Ultrasound Localization Microscopy. 2367-2378 2025 34 IEEE Trans. Image Process. https://doi.org/10.1109/TIP.2025.3552198 db/journals/tip/tip34.html#RaubyXPGP25 streams/journals/tip

Alexis Leconte Jonathan Porée Brice Rauby Alice Wu Nin Ghigo Paul Xing Stephen A. Lee Chloé Bourquin Gerardo Ramos-Palacios Abbas F. Sadikot Jean Provost A Tracking Prior to Localization Workflow for Ultrasound Localization Microscopy. 698-710 2025 February 44 IEEE Trans. Medical Imaging 2 https://doi.org/10.1109/TMI.2024.3456676 db/journals/tmi/tmi44.html#LecontePRWGXLBRSP25 streams/journals/tmi

Stephen A. Lee Alexis Leconte Alice Wu Jonathan Porée Maxence Laplante-Berthier Simon Desrocher Pierre-Olivier Bouchard Joshua Kinugasa Samuel Mihelic Andreas Linninger Jean Provost The-Bodega: A Matlab Toolbox for Biologically Dynamic Microbubble Simulations on Realistic Hemodynamic Microvascular Graphs. 2025 September abs/2509.08149 CoRR https://doi.org/10.48550/arXiv.2509.08149 db/journals/corr/corr2509.html#abs-2509-08149 streams/journals/corr

Paul Xing Jonathan Porée Brice Rauby Antoine Malescot Eric Martineau Vincent Perrot Ravi L. Rungta Jean Provost Phase Aberration Correction for In Vivo Ultrasound Localization Microscopy Using a Spatiotemporal Complex-Valued Neural Network. 662-673 2024 February 43 IEEE Trans. Medical Imaging 2 https://doi.org/10.1109/TMI.2023.3316995 db/journals/tmi/tmi43.html#XingPRMMPRP24

Manon Caudoux Oscar Demeulenaere Jonathan Porée Jack Sauvage Philippe Mateo Bijan Ghaleh Martin Flesch Guillaume Férin Mickaël Tanter Thomas Deffieux Clement Papadacci Mathieu Pernot Curved Toroidal Row Column Addressed Transducer for 3D Ultrafast Ultrasound Imaging. 3279-3291 2024 September 43 IEEE Trans. Medical Imaging 9 https://doi.org/10.1109/TMI.2024.3391689 db/journals/tmi/tmi43.html#CaudouxDPSMGFFTDPP24 streams/journals/tmi

Stephen A. Lee Jonathan Porée Alexis Leconte Alice Wu Jean Provost Ultrasound Localization Microscopy of the Brain: The Missing Micro Vasculature. 1-4 2024 ISBI https://doi.org/10.1109/ISBI56570.2024.10635591 conf/isbi/2024 db/conf/isbi/isbi2024.html#LeePLWP24 streams/conf/isbi

Brice Rauby Paul Xing Jonathan Porée Maxime Gasse Jean Provost Pruning Sparse Tensor Neural Networks Enables Deep Learning for 3D Ultrasound Localization Microscopy. 2024 abs/2402.09359 CoRR https://doi.org/10.48550/arXiv.2402.09359 db/journals/corr/corr2402.html#abs-2402-09359

Léo Milecki Jonathan Porée Hatim Belgharbi Chloé Bourquin Rafat Damseh Patrick Delafontaine-Martel Frédéric Lesage Maxime Gasse Jean Provost A Deep Learning Framework for Spatiotemporal Ultrasound Localization Microscopy. 2023 abs/2310.08143 CoRR https://doi.org/10.48550/arXiv.2310.08143 db/journals/corr/corr2310.html#abs-2310-08143

Chloé Bourquin Jonathan Porée Frédéric Lesage Jean Provost In Vivo Pulsatility Measurement of Cerebral Microcirculation in Rodents Using Dynamic Ultrasound Localization Microscopy. 782-792 2022 41 IEEE Trans. Medical Imaging 4 https://doi.org/10.1109/TMI.2021.3123912 db/journals/tmi/tmi41.html#BourquinPLP22

Léo Milecki Jonathan Porée Hatim Belgharbi Chloé Bourquin Rafat Damseh Patrick Delafontaine-Martel Frédéric Lesage Maxime Gasse Jean Provost A Deep Learning Framework for Spatiotemporal Ultrasound Localization Microscopy. 1428-1437 2021 40 IEEE Trans. Medical Imaging 5 https://doi.org/10.1109/TMI.2021.3056951 db/journals/tmi/tmi40.html#MileckiPBBDDLGP21

Philippe Cormier Jonathan Porée Chloé Bourquin Jean Provost Dynamic Myocardial Ultrasound Localization Angiography. 3379-3388 2021 40 IEEE Trans. Medical Imaging 12 https://doi.org/10.1109/TMI.2021.3086115 db/journals/tmi/tmi40.html#CormierPBP21

Jack Sauvage Jonathan Porée Claire Rabut Guillaume Férin Martin Flesch Bogdan Rosinski An Nguyen-Dinh Mickaël Tanter Mathieu Pernot Thomas Deffieux 4D Functional Imaging of the Rat Brain Using a Large Aperture Row-Column Array. 1884-1893 2020 39 IEEE Trans. Medical Imaging 6 https://doi.org/10.1109/TMI.2019.2959833 https://www.wikidata.org/entity/Q92005652 db/journals/tmi/tmi39.html#SauvagePRFFRNTP20

Hongliang Li Jonathan Porée Boris Chayer Marie-Hélène Roy Cardinal Guy Cloutier Parameterized Strain Estimation for Vascular Ultrasound Elastography With Sparse Representation. 3788-3800 2020 39 IEEE Trans. Medical Imaging 12 https://doi.org/10.1109/TMI.2020.3005017 https://www.wikidata.org/entity/Q98194633 db/journals/tmi/tmi39.html#LiPCCC20

Jonathan Porée Mathilde Baudet Francois Tournoux Guy Cloutier Damien Garcia A Dual Tissue-Doppler Optical-Flow Method for Speckle Tracking Echocardiography at High Frame Rate. 2022-2032 2018 37 IEEE Trans. Medical Imaging 9 https://doi.org/10.1109/TMI.2018.2811483 https://www.wikidata.org/entity/Q89552570 db/journals/tmi/tmi37.html#PoreeBTCG18

Daniel Posada Jonathan Porée Arnaud Pellissier Boris Chayer Francois Tournoux Guy Cloutier Damien Garcia Staggered Multiple-PRF Ultrafast Color Doppler. 1510-1521 2016 35 IEEE Trans. Medical Imaging 6 https://doi.org/10.1109/TMI.2016.2518638 https://www.wikidata.org/entity/Q47595291 db/journals/tmi/tmi35.html#PosadaPPCTCG16

Jonathan Porée Damien Garcia Boris Chayer Jacques Ohayon Guy Cloutier Noninvasive Vascular Elastography With Plane Strain Incompressibility Assumption Using Ultrafast Coherent Compound Plane Wave Imaging. 2618-2631 2015 34 IEEE Trans. Medical Imaging 12 https://doi.org/10.1109/TMI.2015.2450992 https://www.wikidata.org/entity/Q50763200 db/journals/tmi/tmi34.html#PoreeGCOC15

Elizabeth Mercure François Destrempes Marie-Hélène Roy Cardinal Jonathan Porée Gilles Soulez Jacques Ohayon Guy Cloutier A local angle compensation method based on kinematics constraints for non-invasive vascular axial strain computations on human carotid arteries. 123-136 2014 38 Comput. Medical Imaging Graph. 2 https://doi.org/10.1016/j.compmedimag.2013.08.005 https://www.wikidata.org/entity/Q45424064 db/journals/cmig/cmig38.html#MercureDCPSOC14

François Destrempes Jonathan Porée Guy Cloutier Estimation Method of the Homodyned K-Distribution Based on the Mean Intensity and Two Log-Moments. 1499-1530 2013 6 SIAM J. Imaging Sci. 3 https://doi.org/10.1137/120875727 https://www.wikidata.org/entity/Q30439006 db/journals/siamis/siamis6.html#DestrempesPC13

Mathilde Baudet Hatim Belgharbi Pierre-Olivier Bouchard Chloé Bourquin Marie-Hélène Roy Cardinal Manon Caudoux Michael Chassé Boris Chayer Guy Cloutier Philippe Cormier Rafat Damseh Thomas Deffieux Patrick Delafontaine-Martel Oscar Demeulenaere Simon Desrocher François Destrempes Guillaume Férin Martin Flesch Damien Garcia Maxime Gasse Bijan Ghaleh Nin Ghigo Joshua Kinugasa Maxence Laplante-Berthier Alexis Leconte Stephen A. Lee Frédéric Lesage Hongliang Li Andreas Linninger Antoine Malescot Eric Martineau Philippe Mateo Elizabeth Mercure Samuel Mihelic Léo Milecki An Nguyen-Dinh Jacques Ohayon Clement Papadacci Arnaud Pellissier Mathieu Pernot Vincent Perrot Daniel Posada Jean Provost Claire Rabut Gerardo Ramos-Palacios Brice Rauby Bogdan Rosinski Ravi L. Rungta Abbas F. Sadikot Jack Sauvage Gilles Soulez Mickaël Tanter Francois Tournoux Alice Wu Paul Xing