MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data.

Douglas C. Wallace

Larry N. Singh Brian Ennis Bryn Loneragan Noah L. Tsao M. Isabel G. Lopez Sanchez Jianping Li Patrick Acheampong Oanh Tran Ian A. Trounce Yuankun Zhu Prasanth Potluri Regeneron Genetics Center Beverly S. Emanuel Daniel J. Rader Zoltan Arany Scott M. Damrauer Adam C. Resnick Stewart A. Anderson Douglas C. Wallace MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data. 2021 17 PLoS Comput. Biol. 11 https://doi.org/10.1371/journal.pcbi.1009594 db/journals/ploscb/ploscb17.html#SinghELTSLATTZP21

Sanjay Sonney Jeremy Leipzig Marie T. Lott Shiping Zhang Vincent Procaccio Douglas C. Wallace Neal Sondheimer Predicting the pathogenicity of novel variants in mitochondrial tRNA with MitoTIP. 2017 13 PLoS Comput. Biol. 12 https://doi.org/10.1371/journal.pcbi.1005867 https://www.wikidata.org/entity/Q47806814 db/journals/ploscb/ploscb13.html#SonneyLLZPWS17

Ted D. Pham Douglas C. Wallace Peter J. Burke Microchambers with Solid-State Phosphorescent Sensor for Measuring Single Mitochondrial Respiration. 1065 2016 16 Sensors 7 https://doi.org/10.3390/s16071065 https://www.wikidata.org/entity/Q37145482 db/journals/sensors/sensors16.html#PhamWB16

Daniel Navarro-Gomez Jeremy Leipzig Lishuang Shen Marie T. Lott Alphons P. M. Stassen Douglas C. Wallace Janey L. Wiggs Marni J. Falk Mannis van Oven Xiaowu Gai Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier. 1310-1312 2015 31 Bioinform. 8 https://doi.org/10.1093/bioinformatics/btu825 https://www.wikidata.org/entity/Q35367225 db/journals/bioinformatics/bioinformatics31.html#Navarro-GomezLS15

Marty C. Brandon Douglas C. Wallace Pierre Baldi Data structures and compression algorithms for genomic sequence data. 1731-1738 2009 25 Bioinform. 14 https://doi.org/10.1093/bioinformatics/btp319 https://www.wikidata.org/entity/Q33446166 db/journals/bioinformatics/bioinformatics25.html#BrandonWB09

Eduardo Ruiz-Pesini Marie T. Lott Vincent Procaccio Jason C. Poole Marty C. Brandon Dan Mishmar Christina Yi James Kreuziger Pierre Baldi Douglas C. Wallace An enhanced MITOMAP with a global mtDNA mutational phylogeny. 823-828 2007 35 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkl927 https://www.wikidata.org/entity/Q35608504 db/journals/nar/nar35.html#Ruiz-PesiniLPPBMYKBW07

Marty C. Brandon Marie T. Lott Kevin Cuong Nguyen Syawal Spolim Shamkant B. Navathe Pierre Baldi Douglas C. Wallace MITOMAP: a human mitochondrial genome database - 2004 update. 611-613 2005 33 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gki079 https://www.wikidata.org/entity/Q24795655 db/journals/nar/nar33.html#BrandonLNSNBW05

Andreas M. Kogelnik Marie T. Lott Michael D. Brown Shamkant B. Navathe Douglas C. Wallace MITOMAP: a human mitochondrial genome database--1998 update. 112-115 1998 26 Nucleic Acids Res. 1 db/journals/nar/nar26.html#KogelnikLBNW98 https://doi.org/10.1093/nar/26.1.112 https://www.wikidata.org/entity/Q34649422

Andreas M. Kogelnik Marie T. Lott Michael D. Brown Shamkant B. Navathe Douglas C. Wallace MITOMAP: an update on the status of the human mitochondrial genome database. 196-199 1997 25 Nucleic Acids Res. 1 db/journals/nar/nar25.html#KogelnikLBNW97 https://doi.org/10.1093/nar/25.1.196 https://www.wikidata.org/entity/Q34622984

Andreas M. Kogelnik Marie T. Lott Michael D. Brown Shamkant B. Navathe Douglas C. Wallace MITOMAP: a human mitochondrial genome database. 177-179 1996 24 Nucleic Acids Res. 1 db/journals/nar/nar24.html#KogelnikLBNW96 https://doi.org/10.1093/nar/24.1.177 https://www.wikidata.org/entity/Q34586732

Timothy J. Lott Junghui Yang Jianhong Ye Douglas C. Wallace The use of microcomputers for the quantitation of light intensity patterns using digitized video signals. 249-252 1985 1 Comput. Appl. Biosci. 4 db/journals/bioinformatics/bioinformatics1.html#LottYYW85 https://doi.org/10.1093/bioinformatics/1.4.249 https://www.wikidata.org/entity/Q39312729

Junghui Yang Jianhong Ye Douglas C. Wallace Computer selection of oligonucleotide probes from amino acid sequences for use in gene library screening. 837-843 1984 12 Nucleic Acids Res. 1 db/journals/nar/nar12.html#YangYW84 https://doi.org/10.1093/nar/12.1Part2.837 https://www.wikidata.org/entity/Q40466959

Patrick Acheampong Stewart A. Anderson Zoltan Arany Pierre Baldi Marty C. Brandon Michael D. Brown Peter J. Burke Regeneron Genetics Center Scott M. Damrauer Beverly S. Emanuel Brian Ennis Marni J. Falk Xiaowu Gai Andreas M. Kogelnik James Kreuziger Jeremy Leipzig Jianping Li Bryn Loneragan Marie T. Lott Timothy J. Lott Dan Mishmar Daniel Navarro-Gomez Shamkant B. Navathe Kevin Cuong Nguyen Mannis van Oven Ted D. Pham Jason C. Poole Prasanth Potluri Vincent Procaccio Daniel J. Rader Adam C. Resnick Eduardo Ruiz-Pesini M. Isabel G. Lopez Sanchez Lishuang Shen Larry N. Singh Neal Sondheimer Sanjay Sonney Syawal Spolim Alphons P. M. Stassen Oanh Tran Ian A. Trounce Noah L. Tsao Janey L. Wiggs Junghui Yang Jianhong Ye Christina Yi Shiping Zhang Yuankun Zhu