TopMatch-web: pairwise matching of large assemblies of protein and nucleic acid chains in 3D.

Manfred J. Sippl

Markus Wiederstein Manfred J. Sippl TopMatch-web: pairwise matching of large assemblies of protein and nucleic acid chains in 3D. W31-W35 2020 48 Nucleic Acids Res. Webserver-Issue https://doi.org/10.1093/nar/gkaa366 https://www.wikidata.org/entity/Q96033020 db/journals/nar/nar48.html#WiedersteinS20

Alex W. Slater Javier I. Castellanos Manfred J. Sippl Francisco Melo 0001 Towards the development of standardized methods for comparison, ranking and evaluation of structure alignments. 47-53 2013 29 Bioinform. 1 https://doi.org/10.1093/bioinformatics/bts600 https://www.wikidata.org/entity/Q30422265 db/journals/bioinformatics/bioinformatics29.html#SlaterCSM13

Karl Frank Markus Gruber Manfred J. Sippl COPS Benchmark: interactive analysis of database search methods. 574-575 2010 26 Bioinform. 4 https://doi.org/10.1093/bioinformatics/btp712 https://www.wikidata.org/entity/Q43951647 db/journals/bioinformatics/bioinformatics26.html#FrankGS10

Stefan J. Suhrer Markus Wiederstein Markus Gruber Manfred J. Sippl COPS - a novel workbench for explorations in fold space. 539-544 2009 37 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkp411 https://www.wikidata.org/entity/Q41891979 db/journals/nar/nar37.html#SuhrerWGS09

Manfred J. Sippl Markus Wiederstein A note on difficult structure alignment problems. 426-427 2008 24 Bioinform. 3 https://doi.org/10.1093/bioinformatics/btm622 https://www.wikidata.org/entity/Q30366938 db/journals/bioinformatics/bioinformatics24.html#SipplW08

Manfred J. Sippl Stefan J. Suhrer Markus Gruber Markus Wiederstein A discrete view on fold space. 870-871 2008 24 Bioinform. 6 https://doi.org/10.1093/bioinformatics/btn020 https://www.wikidata.org/entity/Q47961261 db/journals/bioinformatics/bioinformatics24.html#SipplSGW08

Manfred J. Sippl On distance and similarity in fold space. 872-873 2008 24 Bioinform. 6 https://doi.org/10.1093/bioinformatics/btn040 https://www.wikidata.org/entity/Q47956023 db/journals/bioinformatics/bioinformatics24.html#Sippl08

Christian X. Weichenberger Piotr Byzia Manfred J. Sippl Visualization of unfavorable interactions in protein folds. 1206-1207 2008 24 Bioinform. 9 https://doi.org/10.1093/bioinformatics/btn108 https://www.wikidata.org/entity/Q46674467 db/journals/bioinformatics/bioinformatics24.html#WeichenbergerBS08

Karl Frank Manfred J. Sippl High-performance signal peptide prediction based on sequence alignment techniques. 2172-2176 2008 24 Bioinform. 19 https://doi.org/10.1093/bioinformatics/btn422 https://www.wikidata.org/entity/Q47402726 db/journals/bioinformatics/bioinformatics24.html#FrankS08

Stefan J. Suhrer Markus Wiederstein Manfred J. Sippl QSCOP - SCOP quantified by structural relationships. 513-514 2007 23 Bioinform. 4 https://doi.org/10.1093/bioinformatics/btl594 https://www.wikidata.org/entity/Q51100441 db/journals/bioinformatics/bioinformatics23.html#SuhrerWS07

Christian X. Weichenberger Manfred J. Sippl NQ-Flipper: recognition and correction of erroneous asparagine and glutamine side-chain rotamers in protein structures. 403-406 2007 35 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkm263 https://www.wikidata.org/entity/Q30361425 db/journals/nar/nar35.html#WeichenbergerS07

Markus Wiederstein Manfred J. Sippl ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins. 407-410 2007 35 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkm290 https://www.wikidata.org/entity/Q29615866 db/journals/nar/nar35.html#WiedersteinS07

Stefan J. Suhrer Markus Gruber Manfred J. Sippl QSCOP-BLAST - fast retrieval of quantified structural information for protein sequences of unknown structure. 411-415 2007 35 Nucleic Acids Res. Web-Server-Issue https://doi.org/10.1093/nar/gkm264 https://www.wikidata.org/entity/Q42432017 db/journals/nar/nar35.html#SuhrerGS07

Christian X. Weichenberger Manfred J. Sippl NQ-Flipper: validation and correction of asparagine/glutamine amide rotamers in protein crystal structures. 1397-1398 2006 22 Bioinform. 11 https://doi.org/10.1093/bioinformatics/btl128 https://www.wikidata.org/entity/Q51233426 db/journals/bioinformatics/bioinformatics22.html#WeichenbergerS06

Andreas Prlic Francisco S. Domingues Peter Lackner Manfred J. Sippl WILMA - automated annotation of protein sequences. 127-128 2004 20 Bioinform. 1 db/journals/bioinformatics/bioinformatics20.html#PrlicDLS04 https://doi.org/10.1093/bioinformatics/btg380 https://www.wikidata.org/entity/Q38522315

Manfred J. Sippl [Invited Lecture] Fold Recognition: Techniques, Applications, and Pitfalls. 1998 conf/gcb/1998 German Conference on Bioinformatics db/conf/gcb/gcb1998.html#Sippl98

Manfred J. Sippl Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures. 473-501 1993 7 J. Comput. Aided Mol. Des. 4 db/journals/jcamd/jcamd7.html#Sippl93 https://doi.org/10.1007/BF02337562 https://www.wikidata.org/entity/Q40775428

Manfred J. Sippl Hans Stegbuchner Superposition of Three-dimensional Objects: A Fast and Numerically Stable Algorithm for the Calculation of the Matrix of Optimal Rotation. 73-78 1991 15 Comput. Chem. 1 https://doi.org/10.1016/0097-8485(91)80026-I db/journals/candc/candc15.html#SipplS91

Piotr Byzia Javier I. Castellanos Francisco S. Domingues Karl Frank Markus Gruber Peter Lackner Francisco Melo 0001 Andreas Prlic Alex W. Slater Hans Stegbuchner Stefan J. Suhrer Christian X. Weichenberger Markus Wiederstein