Random field modeling of multi-trait multi-locus association for detecting methylation quantitative trait loci.

Zhongxue Chen https://orcid.org/0000-0003-2537-7843 https://www.wikidata.org/entity/Q89413324

Chen Lyu 0005 Manyan Huang Nianjun Liu Zhongxue Chen Philip J. Lupo Benjamin Tycko John S. Witte Charlotte A. Hobbs Ming Li Random field modeling of multi-trait multi-locus association for detecting methylation quantitative trait loci. 3853-3862 2022 38 Bioinform. 16 https://doi.org/10.1093/bioinformatics/btac443 https://www.wikidata.org/entity/Q115039387 db/journals/bioinformatics/bioinformatics38.html#LyuHLCLTWHL22

Qingzhong Liu Zhongxue Chen Henry C. Liu A Comparison Study to Detect COVID-19 Chest X-Ray Images with SOTA Deep Learning Models. 146-153 2022 Healthcare AI and COVID-19 Workshop https://proceedings.mlr.press/v184/liu22a.html conf/icml/2022hcai db/conf/icml/hcai2022.html#LiuCL22

Chen Lyu 0005 Manyan Huang Nianjun Liu Zhongxue Chen Philip J. Lupo Benjamin Tycko John S. Witte Charlotte A. Hobbs Ming Li Detecting methylation quantitative trait loci using a methylation random field method. 2021 22 Briefings Bioinform. 6 https://doi.org/10.1093/bib/bbab323 https://www.wikidata.org/entity/Q115039403 db/journals/bib/bib22.html#LyuHLCLTWHL21

Yan Lu Zhongxue Chen Danielle Durán Comparison of two methods in estimating standard error of the method of simulated moments estimators for generalized linear mixed models. 2886-2895 2018 47 Commun. Stat. Simul. Comput. 10 https://doi.org/10.1080/03610918.2017.1361979 db/journals/cssc/cssc47.html#LuCD18

Zhongxue Chen A nonparametric approach to detecting the difference of survival medians. 395-403 2017 46 Commun. Stat. Simul. Comput. 1 https://doi.org/10.1080/03610918.2014.964804 db/journals/cssc/cssc46.html#Chen17

Qingzhong Liu Andrew H. Sung Lei Chen 0029 Ming Yang 0019 Zhongxue Chen Yanxin Liu Jing Zhang 0038 A Method to Detect AAC Audio Forgery. e1 2015 2 EAI Endorsed Trans. Security Safety 6 https://doi.org/10.4108/icst.mobimedia.2015.259141 db/journals/sesa/sesa2.html#LiuSCYCLZ15

Qingzhong Liu Andrew H. Sung Zhongxue Chen Lei Chen 0029 Exposing Image Tampering with the Same Quantization Matrix. 327-343 2015 Multimedia Data Mining and Analytics https://doi.org/10.1007/978-3-319-14998-1_15 books/sp/BGPP2015 db/books/collections/BGPP2015.html#LiuSCC15

Zhongxue Chen Hanwen Huang Qingzhong Liu Detecting differentially methylated loci for multiple treatments based on high-throughput methylation data. 142 2014 15 BMC Bioinform. https://doi.org/10.1186/1471-2105-15-142 https://www.wikidata.org/entity/Q33634313 db/journals/bmcbi/bmcbi15.html#ChenHL14

Jack Y. Yang A. Keith Dunker Jun S. Liu Xiang Qin Hamid R. Arabnia William Yang Andrzej Niemierko Zhongxue Chen Zuojie Luo Liangjiang Wang Yunlong Liu Dong Xu Youping Deng Weida Tong Mary Qu Yang Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. I1 2014 15 BMC Bioinform. S-17 https://doi.org/10.1186/1471-2105-15-S17-I1 https://www.wikidata.org/entity/Q35005211 db/journals/bmcbi/bmcbi15S.html#YangDLQAYNCLWLXDTY14

William Yang Kenji Yoshigoe Xiang Qin Jun S. Liu Jack Y. Yang Andrzej Niemierko Youping Deng Yunlong Liu A. Keith Dunker Zhongxue Chen Liangjiang Wang Dong Xu Hamid R. Arabnia Weida Tong Mary Qu Yang Identification of genes and pathways involved in kidney renal clear cell carcinoma. S2 2014 15 BMC Bioinform. S-17 https://doi.org/10.1186/1471-2105-15-S17-S2 https://www.wikidata.org/entity/Q35005236 db/journals/bmcbi/bmcbi15S.html#YangYQLYNDLDCWXATY14

Zhongxue Chen William Yang Qingzhong Liu Jack Y. Yang Jing Li 0003 Mary Yang A new statistical approach to combining p-values using gamma distribution and its application to genome-wide association study. S3 2014 15 BMC Bioinform. S-17 https://doi.org/10.1186/1471-2105-15-S17-S3 https://www.wikidata.org/entity/Q35005243 db/journals/bmcbi/bmcbi15S.html#ChenYLYLY14

Zhongxue Chen Saralees Nadarajah On the optimally weighted z-test for combining probabilities from independent studies. 387-394 2014 70 Comput. Stat. Data Anal. https://doi.org/10.1016/j.csda.2013.09.005 db/journals/csda/csda70.html#ChenN14

Qingzhong Liu Zhongxue Chen Improved Approaches with Calibrated Neighboring Joint Density to Steganalysis and Seam-Carved Forgery Detection in JPEG Images. 63:1-63:30 2014 5 ACM Trans. Intell. Syst. Technol. 4 https://doi.org/10.1145/2560365 db/journals/tist/tist5.html#LiuC14

Qingzhong Liu Peter A. Cooper Lei Chen 0029 Hyuk Cho Zhongxue Chen Mengyu Qiao Yuting Su 0001 Mingzhen Wei Andrew H. Sung Detection of JPEG double compression and identification of smartphone image source and post-capture manipulation. 705-726 2013 39 Appl. Intell. 4 https://doi.org/10.1007/s10489-013-0430-z db/journals/apin/apin39.html#LiuCCCCQSWS13

Hanwen Huang Zhongxue Chen Xudong Huang Age-adjusted nonparametric detection of differential DNA methylation with case-control designs. 86 2013 14 BMC Bioinform. https://doi.org/10.1186/1471-2105-14-86 https://www.wikidata.org/entity/Q34622890 db/journals/bmcbi/bmcbi14.html#HuangCH13

Zhongxue Chen Qingzhong Liu Saralees Nadarajah A new statistical approach to detecting differentially methylated loci for case control Illumina array methylation data. 1109-1113 2012 28 Bioinform. 8 https://doi.org/10.1093/bioinformatics/bts093 https://www.wikidata.org/entity/Q34173082 db/journals/bioinformatics/bioinformatics28.html#ChenLN12

Qingzhong Liu Xiaodong Li Lei Chen 0029 Hyuk Cho Peter A. Cooper Zhongxue Chen Mengyu Qiao Andrew H. Sung Identification of Smartphone-Image Source and Manipulation. 262-271 2012 IEA/AIE https://doi.org/10.1007/978-3-642-31087-4_28 conf/ieaaie/2012 db/conf/ieaaie/ieaaie2012.html#LiuLCCCCQS12

Zhongxue Chen Jianzhong Liu Hon Ng Saralees Nadarajah Howard L. Kaufman Jack Y. Yang Youping Deng Statistical methods on detecting differentially expressed genes for RNA-seq data. S1 2011 5 BMC Syst. Biol. S-3 https://doi.org/10.1186/1752-0509-5-S3-S1 https://www.wikidata.org/entity/Q34333512 db/journals/bmcsb/bmcsb5S.html#ChenLNNKYD11

Qingzhong Liu Andrew H. Sung Zhongxue Chen Xudong Huang A JPEG-based statistically invisible steganography. 78-81 2011 ICIMCS https://doi.org/10.1145/2043674.2043697 conf/icimcs/2011 db/conf/icimcs/icimcs2011.html#LiuSCH11

Zhongxue Chen Monnie McGee Qingzhong Liu Y. Megan Kong Xudong Huang Jack Y. Yang Richard H. Scheuermann Identifying Differentially Expressed Genes based on probe level data for GeneChip arrays. 237-257 2010 3 Int. J. Comput. Biol. Drug Des. 3 https://doi.org/10.1504/IJCBDD.2010.038028 https://www.wikidata.org/entity/Q33791792 db/journals/ijcbdd/ijcbdd3.html#ChenMLKHYS10

Qingzhong Liu Andrew H. Sung Mengyu Qiao Zhongxue Chen Bernardete Ribeiro An improved approach to steganalysis of JPEG images. 1643-1655 2010 180 Inf. Sci. 9 https://doi.org/10.1016/j.ins.2010.01.001 db/journals/isci/isci180.html#LiuSQCR10

Qingzhong Liu Andrew H. Sung Bernardete Ribeiro Mingzhen Wei Zhongxue Chen Jianyun Xu Image complexity and feature mining for steganalysis of least significant bit matching steganography. 21-36 2008 178 Inf. Sci. 1 https://doi.org/10.1016/j.ins.2007.08.007 db/journals/isci/isci178.html#LiuSRWCX08

Qingzhong Liu Andrew H. Sung Zhongxue Chen Jianyun Xu Feature mining and pattern classification for steganalysis of LSB matching steganography in grayscale images. 56-66 2008 41 Pattern Recognit. 1 https://doi.org/10.1016/j.patcog.2007.06.005 db/journals/pr/pr41.html#LiuSCX08

Zhongxue Chen Monnie McGee Qingzhong Liu Richard H. Scheuermann A distribution free summarization method for Affymetrix GeneChip<sup>®</sup> arrays. 321-327 2007 23 Bioinform. 3 https://doi.org/10.1093/bioinformatics/btl609 https://www.wikidata.org/entity/Q56880035 db/journals/bioinformatics/bioinformatics23.html#ChenMLS07

Qingzhong Liu Andrew H. Sung Jianyun Xu Jianzhong Liu Zhongxue Chen Microarray Gene Expression Classification Based on Supervised Learning and Similarity Measures. 5094-5099 2006 SMC https://doi.org/10.1109/ICSMC.2006.385116 conf/smc/2006 db/conf/smc/smc2006.html#LiuSXLC06 Hamid R. Arabnia Lei Chen 0029 Hyuk Cho Peter A. Cooper Youping Deng A. Keith Dunker Danielle Durán Charlotte A. Hobbs Hanwen Huang Manyan Huang Xudong Huang Howard L. Kaufman Y. Megan Kong Jing Li 0003 Ming Li Xiaodong Li Henry C. Liu Jianzhong Liu Jun S. Liu Nianjun Liu Qingzhong Liu Yanxin Liu Yunlong Liu Yan Lu Zuojie Luo Philip J. Lupo Chen Lyu 0005 Monnie McGee Saralees Nadarajah Hon Ng Andrzej Niemierko Mengyu Qiao Xiang Qin Bernardete Ribeiro Richard H. Scheuermann Yuting Su 0001 Andrew H. Sung Weida Tong Benjamin Tycko Liangjiang Wang Mingzhen Wei John S. Witte Dong Xu Jianyun Xu Jack Y. Yang Mary YangMary Qu Yang Ming Yang 0019 William Yang Kenji Yoshigoe Jing Zhang 0038