Investigating Deep-Learning NLP for Automating the Extraction of Oncology Efficacy Endpoints from Scientific Literature.

David Milward

Aline Gendrin-Brokmann Eden Harrison Julianne Noveras Leonidas Souliotis Harris Vince Ines Smit Francisco Costa David Milward Sashka Dimitrievska Paul D. Metcalfe Emilie Louvet Investigating Deep-Learning NLP for Automating the Extraction of Oncology Efficacy Endpoints from Scientific Literature. 2023 abs/2311.04925 CoRR https://doi.org/10.48550/arXiv.2311.04925 db/journals/corr/corr2311.html#abs-2311-04925

David Milward Semantic model driven engineering. 2020 University of Oxford, UK https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.860085 http://ora.ox.ac.uk/objects/uuid:327032d0-c1d1-4a35-bb24-e66a48784cbf British Library, EThOS

Jim Davies James Welch David Milward Steve Harris A formal, scalable approach to semantic interoperability. 102426 2020 192 Sci. Comput. Program. https://doi.org/10.1016/j.scico.2020.102426 db/journals/scp/scp192.html#DaviesWMH20

David Milward Model Driven Data Management in Healthcare. 105-116 2019 MODELSWARD https://doi.org/10.5220/0007391101070118 conf/modelsward/2019 db/conf/modelsward/modelsward2019.html#Milward19 David Milward Dataset Management Using Metadata. 156-181 2019 MODELSWARD (Revised Selected Papers) https://doi.org/10.1007/978-3-030-37873-8_7 conf/modelsward/2019s db/conf/modelsward/modelsward2019s.html#Milward19a

Thomas Ly Carol A. Pamer Oanh Dang Sonja Brajovic Shahrukh Haider Taxiarchis Botsis David Milward Andrew Winter Susan Lu Robert Ball Evaluation of Natural Language Processing (NLP) systems to annotate drug product labeling with MedDRA terminology. 73-86 2018 83 J. Biomed. Informatics https://doi.org/10.1016/j.jbi.2018.05.019 https://www.wikidata.org/entity/Q88960035 db/journals/jbi/jbi83.html#LyPDBHBMWLB18

Giannis V. Koumoutsos Maria Fasli Ian Lewin David Milward Graph-based information exploration over structured and unstructured data. 1991-2000 2017 IEEE BigData https://doi.org/10.1109/BigData.2017.8258145 conf/bigdataconf/2017 db/conf/bigdataconf/bigdataconf2017.html#KoumoutsosFLM17

James Cormack Chinmoy Nath David Milward Kalpana Raja Siddhartha R. Jonnalagadda Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge. S120-S127 2015 58 J. Biomed. Informatics https://doi.org/10.1016/j.jbi.2015.06.030 https://www.wikidata.org/entity/Q28601493 db/journals/jbi/jbi58.html#CormackNMRJ15

Jim Davies David Milward Chen-Wei Wang James Welch Formal model-driven engineering of critical information systems. 88-113 2015 103 Sci. Comput. Program. https://doi.org/10.1016/j.scico.2014.11.004 db/journals/scp/scp103.html#DaviesMWW15

Jim Davies Jeremy Gibbons Adam Milward David Milward Seyyed Shah Monika Solanki James Welch Domain specific modelling for clinical research. 1-8 2015 DSM@SPLASH https://doi.org/10.1145/2846696.2846701 conf/oopsla/2015dsm db/conf/oopsla/dsm2015.html#DaviesGMMSSW15 Chaitanya Shivade James Cormack David Milward Precise Medication Extraction using Agile Text Mining. 75-79 2014 Louhi@EACL https://doi.org/10.3115/v1/W14-1111 conf/acl-louhi/2014 db/conf/acl-louhi/acl-louhi2014.html#ShivadeCM14 Philipp Daumke Michael Poprat David Milward Ian Lewin A Semi-Automatically Enriched Multi-Lingual Terminology in Commercial Products. 2013 CLEF (Working Notes) https://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFER-DaumkeEt2013.pdf conf/clef/2013w db/conf/clef/clef2013w.html#DaumkePML13 Dietrich Rebholz-Schuhmann Simon Clematide Fabio Rinaldi 0001 Senay Kafkas Erik M. van Mulligen Quoc-Chinh Bui Johannes Hellrich Ian Lewin David Milward Michael Poprat Antonio Jimeno-Yepes Udo Hahn Jan A. Kors Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview. 353-367 2013 CLEF https://doi.org/10.1007/978-3-642-40802-1_32 https://www.wikidata.org/entity/Q56509209 conf/clef/2013 db/conf/clef/clef2013.html#Rebholz-SchuhmannCRKMBHLMPJHK13 Dietrich Rebholz-Schuhmann Simon Clematide Fabio Rinaldi 0001 Senay Kafkas Erik M. van Mulligen Quoc-Chinh Bui Johannes Hellrich Ian Lewin David Milward Michael Poprat Antonio Jimeno-Yepes Udo Hahn Jan A. Kors Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge. 2013 CLEF (Working Notes) https://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFER-Rebholz-SchuhmannEt2013.pdf conf/clef/2013w db/conf/clef/clef2013w.html#Rebholz-SchuhmannCRKMBHLMPJHK13a Senay Kafkas Ian Lewin David Milward Erik M. van Mulligen Jan A. Kors Udo Hahn Dietrich Rebholz-Schuhmann CALBC: Releasing the Final Corpora. 2923-2926 2012 LREC http://www.lrec-conf.org/proceedings/lrec2012/summaries/827.html conf/lrec/2012 db/conf/lrec/lrec2012.html#KafkasLMMKHR12 Jim Davies Jeremy Gibbons David Milward James Welch Compositionality and Refinement in Model-Driven Engineering. 99-114 2012 SBMF https://doi.org/10.1007/978-3-642-33296-8_9 conf/sbmf/2012 db/conf/sbmf/sbmf2012.html#DaviesGMW12

Dietrich Rebholz-Schuhmann Antonio Jimeno-Yepes Chen Li 0011 Senay Kafkas Ian Lewin Ning Kang 0002 Peter T. Corbett David Milward Ekaterina Buyko Elena Beisswanger Kerstin Hornbostel Alexandre Kouznetsov René Witte Jonas B. Laurila Christopher J. O. Baker Cheng-Ju Kuo Simon Clematide Fabio Rinaldi 0001 Richárd Farkas György Móra Kazuo Hara Laura Inés Furlong Michael Rautschka Mariana L. Neves Alberto D. Pascual-Montano Qi Wei 0008 Nigel Collier Md. Faisal Mahbub Chowdhury Alberto Lavelli Rafael Berlanga Llavori Roser Morante Vincent Van Asch Walter Daelemans José Luís Marina Erik M. van Mulligen Jan A. Kors Udo Hahn Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. S11 2011 2 J. Biomed. Semant. S-5 http://www.jbiomedsem.com/content/2/S5/S11 db/journals/biomedsem/biomedsem2S.html#Rebholz-SchuhmannJL11

Dietrich Rebholz-Schuhmann Antonio Jimeno-Yepes Erik M. van Mulligen Ning Kang 0002 Jan A. Kors David Milward Peter T. Corbett Ekaterina Buyko Elena Beisswanger Udo Hahn Calbc Silver Standard Corpus. 163-179 2010 8 J. Bioinform. Comput. Biol. 1 https://doi.org/10.1142/S0219720010004562 https://www.wikidata.org/entity/Q38375503 db/journals/jbcb/jbcb8.html#Rebholz-SchuhmannJMKKMCBBH10

Dietrich Rebholz-Schuhmann Antonio José Jimeno-Yepes Erik M. van Mulligen Ning Kang 0002 Jan A. Kors David Milward Peter T. Corbett Ekaterina Buyko Katrin Tomanek Elena Beisswanger Udo Hahn The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers. 2010 LREC http://www.lrec-conf.org/proceedings/lrec2010/summaries/888.html conf/lrec/2010 db/conf/lrec/lrec2010.html#Rebholz-SchuhmannJMKKMCBTBH10 Adam Z. Wyner Raquel Mochales Palau Marie-Francine Moens David Milward Approaches to Text Mining Arguments from Legal Cases. 60-79 2010 Semantic Processing of Legal Texts https://doi.org/10.1007/978-3-642-12837-0_4 https://www.wikidata.org/entity/Q57727126 conf/lrec/2010legal db/conf/lrec/legal2010.html#WynerPMM10 Dietrich Rebholz-Schuhmann Antonio Jimeno-Yepes Chen Li 0011 Senay Kafkas Ian Lewin Ning Kang 0002 Peter T. Corbett David Milward Ekaterina Buyko Elena Beisswanger Kerstin Hornbostel Alexandre Kouznetsov René Witte Jonas B. Laurila Christopher J. O. Baker Cheng-Ju Kuo Simon Clematide Fabio Rinaldi 0001 Richárd Farkas György Móra Kazuo Hara Laura Inés Furlong Michael Rautschka Mariana L. Neves Alberto D. Pascual-Montano Qi Wei 0008 Nigel Collier Md. Faisal Mahbub Chowdhury Alberto Lavelli Rafael Berlanga Llavori Roser Morante Vincent Van Asch Walter Daelemans José Luís Marina Erik M. van Mulligen Jan A. Kors Udo Hahn Assessment of NER solutions against the first and second CALBC silver standard corpus. 2010 Semantic Mining in Biomedicine https://ceur-ws.org/Vol-714/Paper08_RebholzSchuhmann.pdf conf/smbm/2010 db/conf/smbm/smbm2010.html#Rebholz10 David Milward Ontology-Based Interactive Information Extraction. 2008 Ontologies and Text Mining for Life Sciences http://drops.dagstuhl.de/opus/volltexte/2008/1515 conf/dagstuhl/2008P8131 db/conf/dagstuhl/P8131.html#Milward08 David Milward Christian Blaschke Jean-Marc Neefs Mark-Christoph Ott Rudi Verbeeck Andrew Stubbs Flexible Text Mining Strategies for Drug Discovery. 2006 SMBM https://ceur-ws.org/Vol-177/poster_milward.pdf conf/smbm/2006 db/conf/smbm/smbm2006.html#MilwardBNOVS06 Martin Beveridge John Fox 0001 David Milward Speech Interfaces for Point-of-Care Guideline Systems. 76-80 https://doi.org/10.1007/978-3-540-39907-0_11 2003 conf/aime/2003 AIME db/conf/aime/aime2003.html#BeveridgeFM03 Martin Beveridge David Milward Combining Task Descriptions and Ontological Knowledge for Adaptive Dialogue. 341-348 https://doi.org/10.1007/978-3-540-39398-6_49 2003 conf/tsd/2003 TSD db/conf/tsd/tsd2003.html#BeveridgeM03 Sylvia Knight Genevieve Gorrell Manny Rayner David Milward Rob Koeling Ian Lewin Comparing grammar-based and robust approaches to speech understanding: a case study. 1779-1782 2001 INTERSPEECH https://doi.org/10.21437/Eurospeech.2001-420 conf/interspeech/2001 db/conf/interspeech/interspeech2001.html#KnightGRMKL01 David Milward Distributing Representation for Robust Interpretation of Dialogue Utterances. 2000 conf/acl/2000 ACL https://aclanthology.org/P00-1018/ https://doi.org/10.3115/1075218.1075236 db/conf/acl/acl2000.html#Milward00 133-141 Klaus Netter Susan Armstrong Tibor Kiss Judith Klein S. Lebmann David Milward Sylvie Regnier-Prost R. Schiiler Tillmann Wegst DIET -Diaguostic andEvaluation Tools for Natural Langúage Processing Applications. 573-580 1998 LREC conf/lrec/1998 db/conf/lrec/lrec1998.html#NetterAKKLMRSW98 Karsten Konrad Holger Maier David Milward Manfred Pinkal An Education and Research Tool for Computational Semantics. 1098-1101 1996 conf/coling/1996 COLING https://aclanthology.org/C96-2197/ db/conf/coling/coling1996.html#KonradMMP96 Karsten Konrad Holger Maier Manfred Pinkal David Milward CLEARS - Ein Werkzeug für Ausbildung und Forschung in der Computerlinguistik. 379-387 1996 conf/konvens/1996 KONVENS db/conf/konvens/konvens1996.html#KonradMPM96

David Milward Karsten Konrad Holger Maier Manfred Pinkal CLEARS - An Education and Research Tool for Computational Semantics http://arxiv.org/abs/cmp-lg/9608005 1996 CoRR cmp-lg/9608005 db/journals/corr/corr9608.html#cmp-lg-9608005

David Milward Incremental Interpretation of Categorial Grammar. 119-126 1995 conf/eacl/1995 EACL https://aclanthology.org/E95-1017/ db/conf/eacl/eacl1995.html#Milward95

David Milward Robin Cooper Incremental Interpretation: Applications, Theory, and Relationship to Dynamic Semantics http://arxiv.org/abs/cmp-lg/9503013 1995 CoRR cmp-lg/9503013 db/journals/corr/corr9503.html#cmp-lg-9503013

David Milward Non-Constituent Coordination: Theory and Practice http://arxiv.org/abs/cmp-lg/9503014 1995 CoRR cmp-lg/9503014 db/journals/corr/corr9503.html#cmp-lg-9503014

David Milward Incremental Interpretation of Categorial Grammar http://arxiv.org/abs/cmp-lg/9503015 1995 CoRR cmp-lg/9503015 db/journals/corr/corr9503.html#cmp-lg-9503015

David Milward Robin Cooper Incremental Interpretation: Applications, Theory, And Relationship To Dynamic Semantics. 748-754 1994 conf/coling/1994 COLING https://aclanthology.org/C94-2120/ db/conf/coling/coling1994.html#MilwardC94 David Milward Non-Constituent Coordination: Theory And Practice. 935-941 1994 conf/coling/1994 COLING https://aclanthology.org/C94-2151/ db/conf/coling/coling1994.html#Milward94 David Milward Dynamics, Dependency Grammar And Incremental Interpretation. 1095-1099 1992 conf/coling/1992 COLING https://aclanthology.org/C92-4171/ db/conf/coling/coling1992.html#Milward92 David Milward Coordination in an Axiomatic Grammar. 207-212 1990 conf/coling/1990 COLING https://aclanthology.org/C90-3037/ db/conf/coling/coling1990.html#Milward90 Susan Armstrong Vincent Van Asch Christopher J. O. Baker Robert Ball Elena Beisswanger Jonas Laurila BergmanJonas B. Laurila Martin Beveridge Christian Blaschke Taxiarchis Botsis Sonja Brajovic Quoc-Chinh Bui Ekaterina Buyko Md. Faisal Mahbub Chowdhury Simon Clematide Nigel Collier Robin Cooper Peter T. Corbett James Cormack Francisco Costa Walter Daelemans Oanh Dang Philipp Daumke Jim Davies Sashka Dimitrievska Richárd Farkas Maria Fasli John Fox 0001 Laura Inés Furlong Aline Gendrin-Brokmann Jeremy Gibbons Genevieve Gorrell Udo Hahn Shahrukh Haider Kazuo Hara Steve Harris Eden Harrison Johannes Hellrich Kerstin Hornbostel Antonio Jimeno-YepesAntonio José Jimeno-Yepes Siddhartha JonnalagaddaSiddhartha R. Jonnalagadda Senay Kafkas Ning Kang 0002 Tibor Kiss Judith Klein Sylvia Knight Rob Koeling Karsten Konrad Jan A. Kors Giannis V. Koumoutsos Alexandre Kouznetsov Cheng-Ju Kuo Alberto Lavelli S. Lebmann Ian Lewin Chen Li 0011 Rafael Berlanga Llavori Emilie Louvet Susan Lu Thomas Ly Holger Maier José Luís Marina Paul D. Metcalfe Adam Milward Marie-Francine Moens György Móra Roser Morante Erik M. van Mulligen Chinmoy Nath Jean-Marc Neefs Klaus Netter Mariana L. Neves Julianne Noveras Mark-Christoph Ott Raquel Mochales Palau Carol A. Pamer Alberto D. Pascual-Montano Manfred Pinkal Michael Poprat Kalpana Raja Michael Rautschka Manny Rayner Dietrich Rebholz-Schuhmann Sylvie Regnier-Prost Fabio Rinaldi 0001 R. Schiiler Seyyed Shah Chaitanya P. ShivadeChaitanya Shivade Ines Smit Monika Solanki Leonidas Souliotis Andrew Stubbs Katrin Tomanek Rudi Verbeeck Harris Vince Chen-Wei Wang Tillmann Wegst Qi Wei 0008 James Welch Andrew Winter René Witte Adam Z. Wyner