Sinogram domain angular upsampling of sparse-view micro-CT with dense residual hierarchical transformer and attention-weighted loss.

Keith C. Cheng

Amogh Subbakrishna Adishesha Daniel J. Vanselow Patrick J. La Rivière Keith C. Cheng Sharon X. Huang Sinogram domain angular upsampling of sparse-view micro-CT with dense residual hierarchical transformer and attention-weighted loss. 107802 2023 December 242 Comput. Methods Programs Biomed. https://doi.org/10.1016/j.cmpb.2023.107802 db/journals/cmpb/cmpb242.html#AdisheshaVRCH23

Yuan Xue 0002 Jiarong Ye Qianying Zhou L. Rodney Long Sameer K. Antani Zhiyun Xue Carl Cornwell Richard Zaino Keith C. Cheng Xiaolei Huang 0001 Selective synthetic augmentation with HistoGAN for improved histopathology image classification. 101816 2021 67 Medical Image Anal. https://doi.org/10.1016/j.media.2020.101816 https://www.wikidata.org/entity/Q100745896 db/journals/mia/mia67.html#XueYZLAXCZCH21

Amogh Subbakrishna Adishesha Daniel J. Vanselow Patrick J. La Rivière Xiaolei Huang 0001 Keith C. Cheng Zebrafish Histotomography Noise Removal In Projection And Reconstruction Domains. 140-144 2021 ISBI https://doi.org/10.1109/ISBI48211.2021.9433914 conf/isbi/2021 db/conf/isbi/isbi2021.html#AdisheshaVRHC21 Jiarong Ye Yuan Xue 0002 Peter Liu Richard Zaino Keith C. Cheng Xiaolei Huang 0001 A Multi-attribute Controllable Generative Model for Histopathology Image Synthesis. 613-623 2021 MICCAI (8) https://doi.org/10.1007/978-3-030-87237-3_59 conf/miccai/2021-8 db/conf/miccai/miccai2021-8.html#YeXLZCH21

Jiarong Ye Yuan Xue 0002 Peter Liu Richard Zaino Keith C. Cheng Xiaolei Huang 0001 A Multi-attribute Controllable Generative Model for Histopathology Image Synthesis. 2021 abs/2111.06398 CoRR https://arxiv.org/abs/2111.06398 db/journals/corr/corr2111.html#abs-2111-06398

Yuan Xue 0002 Jiarong Ye Qianying Zhou L. Rodney Long Sameer K. Antani Zhiyun Xue Carl Cornwell Richard Zaino Keith C. Cheng Xiaolei Huang 0001 Selective Synthetic Augmentation with HistoGAN for Improved Histopathology Image Classification. 2021 abs/2111.06399 CoRR https://arxiv.org/abs/2111.06399 db/journals/corr/corr2111.html#abs-2111-06399

Samarth Gupta Yuan Xue 0002 Yifu Ding Daniel Vanselow Maksim Yakovlev Damian B. van Rossum Sharon X. Huang Keith C. Cheng Supervised machine learning for region assignment of zebrafish brain nuclei based on computational assessment of cell neighborhoods. 113170T 2020 Biomedical Applications in Molecular, Structural, and Functional Imaging https://doi.org/10.1117/12.2548896 conf/mibam/2020 db/conf/mibam/mibam2020.html#GuptaXDVYRHC20 Jiarong Ye Yuan Xue 0002 L. Rodney Long Sameer K. Antani Zhiyun Xue Keith C. Cheng Xiaolei Huang 0001 Synthetic Sample Selection via Reinforcement Learning. 53-63 2020 MICCAI (1) https://doi.org/10.1007/978-3-030-59710-8_6 conf/miccai/2020-1 db/conf/miccai/miccai2020-1.html#YeXLAXCH20

Jiarong Ye Yuan Xue 0002 L. Rodney Long Sameer K. Antani Zhiyun Xue Keith C. Cheng Xiaolei Huang 0001 Synthetic Sample Selection via Reinforcement Learning. 2020 abs/2008.11331 CoRR https://arxiv.org/abs/2008.11331 db/journals/corr/corr2008.html#abs-2008-11331

Brian A. Canada Georgia K. Thomas Keith C. Cheng James Ze Wang SHIRAZ: an automated histology image annotation system for zebrafish phenomics. 401-440 2011 51 Multim. Tools Appl. 2 https://doi.org/10.1007/s11042-010-0638-4 https://www.wikidata.org/entity/Q41845937 db/journals/mta/mta51.html#CanadaTCW11

Brian A. Canada Georgia K. Thomas Timothy Cooper Keith C. Cheng A Case Study in Using ZFA and PATO for Describing Histological Phenotypes in the Larval Zebrafish. 2011 ICBO https://ceur-ws.org/Vol-833/paper90.pdf conf/icbo/2011 db/conf/icbo/icbo2011.html#CanadaTCC11 Brian A. Canada Georgia K. Thomas John Schleicher James Ze Wang Keith C. Cheng SHIRAZ and CABERNET: Leveraging Automation, Crowdsourcing, and Ontologies to Improve the Accuracy and Throughput of Zebrafish Histological Phenotype Annotations. 2011 ICBO https://ceur-ws.org/Vol-833/paper50.pdf conf/icbo/2011 db/conf/icbo/icbo2011.html#CanadaTSWC11 Chris Mungall David Anderson Anita E. Bandrowski Brian A. Canada Andrew Chatr-aryamontri Keith C. Cheng P. Michael Conn Kara Dolinski Mark H. Ellisman Janan T. Eppig Jeffrey S. Grethe Joseph W. Kemnitz Shawn Iadonato Stephen D. Larson Charles Magness Maryann E. Martone Mike Tyers Carlo Torniai Olga G. Troyanskaya Judith Turner Monte Westerfield Melissa A. Haendel An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. 2011 ICBO https://ceur-ws.org/Vol-833/paper43.pdf conf/icbo/2011 db/conf/icbo/icbo2011.html#MungallABCCCCDEEGKILMMTTTTWH11 Brian A. Canada Georgia K. Thomas Keith C. Cheng James Ze Wang Yanxi Liu 0001 Towards efficient automated characterization of irregular histology images via transformation to frieze-like patterns. 581-590 2008 CIVR https://doi.org/10.1145/1386352.1386437 https://www.wikidata.org/entity/Q57773907 conf/civr/2008 db/conf/civr/civr2008.html#CanadaTCWL08 Brian A. Canada Georgia K. Thomas Keith C. Cheng James Ze Wang Yanxi Liu 0001 Automatic lattice detection in near-regular histology array images. 1452-1455 2008 ICIP https://doi.org/10.1109/ICIP.2008.4712039 https://www.wikidata.org/entity/Q57773898 conf/icip/2008 db/conf/icip/icip2008.html#CanadaTCWL08 Brian A. Canada Keith C. Cheng James Ze Wang QCHARM: A Novel Computational and Scientific Visualization Framework for Facilitating Discovery and Improving Diagnostic Reliability in Medicine. 2006 AMIA https://knowledge.amia.org/amia-55142-a2006a-1.620145/t-002-1.622268/f-001-1.622269/a-198-1.623149/a-199-1.623146 conf/amia/2006 db/conf/amia/amia2006.html#CanadaCW06 Amogh Subbakrishna Adishesha David Anderson Sameer K. Antani Anita E. Bandrowski Brian A. Canada Andrew Chatr-aryamontri P. Michael Conn Timothy Cooper Carl Cornwell Yifu Ding Kara Dolinski Mark H. Ellisman Janan T. Eppig Jeffrey S. Grethe Samarth Gupta Melissa A. Haendel Sharon X. HuangXiaolei Huang 0001 Shawn Iadonato Joseph W. Kemnitz Stephen D. Larson Peter Liu Yanxi Liu 0001 L. Rodney Long Charles Magness Maryann E. Martone Chris Mungall Patrick J. La Rivière Damian B. van Rossum John Schleicher Georgia K. Thomas Carlo Torniai Olga G. Troyanskaya Judith Turner Mike Tyers Daniel VanselowDaniel J. Vanselow James Z. Wang 0001James Ze Wang Monte Westerfield Yuan Xue 0002 Zhiyun Xue Maksim Yakovlev Jiarong Ye Richard Zaino Qianying Zhou