rPDBapi: A Comprehensive Interface for Accessing the Protein Data Bank

Streamlines the interaction with the 'RCSB' Protein Data Bank ('PDB') <https://www.rcsb.org/>. This interface offers an intuitive and powerful tool for searching and retrieving a diverse range of data types from the 'PDB'. It includes advanced functionalities like BLAST and sequence motif queries. Built upon the existing XML-based API of the 'PDB', it simplifies the creation of custom requests, thereby enhancing usability and flexibility for researchers.

Version: 3.0.0
Imports: dplyr, purrr, httr, jsonlite, xml2, bio3d, magrittr, methods
Suggests: knitr, rmarkdown, testthat
Published: 2026-03-07
DOI: 10.32614/CRAN.package.rPDBapi
Author: Selcuk Korkmaz ORCID iD [aut, cre], Bilge Eren Yamasan ORCID iD [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Citation: rPDBapi citation info
Materials: README, NEWS
CRAN checks: rPDBapi results

Documentation:

Reference manual: rPDBapi.html , rPDBapi.pdf
Vignettes: Accessing and Analyzing RCSB PDB Data with rPDBapi (source, R code)

Downloads:

Package source: rPDBapi_3.0.0.tar.gz
Windows binaries: r-devel: rPDBapi_3.0.0.zip, r-release: rPDBapi_2.1.2.zip, r-oldrel: rPDBapi_2.1.2.zip
macOS binaries: r-release (arm64): rPDBapi_3.0.0.tgz, r-oldrel (arm64): rPDBapi_3.0.0.tgz, r-release (x86_64): rPDBapi_2.1.2.tgz, r-oldrel (x86_64): rPDBapi_2.1.2.tgz
Old sources: rPDBapi archive

Linking:

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