INFO   : Folder may be read-only, or may not exist                                                                                           (ProjectArchiver.archives:93)
INFO   : Handling urls ...                                                                                                                   (MainWindow._processDroppedItems:1692)
WARNING: /Users/mh653/ProfileByReferenceTutorial/PBR_lookup.xlsx Is not a valid dynamic logLevel. MSG: application.loadData()                (Gui.echoCommands:526)
WARNING: /Users/mh653/ProfileByReferenceTutorial/Spectra/311/pdata/1/procs (line:10): Extraneous 'w##$ABSF1= 0'                              (BrukerSpectrumDataSource.read_jcamp:719)
INFO   : Failed auto-setting experiment types: not all isotopeCodes are unique.                                                              (Spectrum._autoSetExperimentDims:825)
WARNING: <SP:media_cell_S0-JR (Bruker); 2D (H,H_2)> Is not a valid dynamic logLevel. MSG: mainWindow.newSpectrumDisplay(axisCodes=('H', 'H_2'), stripDirection='Y', position=None, relativeTo=None)    (Gui.echoCommands:526)
INFO   : application.showMetabolomicsPipeline(position='bottom', relativeTo=None)                      (AnalysisMetabolomics.showMetabolomicsPipeline:52)    (Gui.echoCommands:526)
INFO   : Loading user Pipes from: /Users/mh653/.ccpn/pipes                                                                                   (PipelineModule._loadUserPipes:220)
INFO   : Pipeline: Started on 2025-10-30 14:41:00.602201                                                                                     (PipelineModule._runPipeline:503)
INFO   : Pipeline: Completed in 0s                                                                                                           (PipelineModule._runPipeline:525)
INFO   : application.saveProjectAs(newPath=None, overwrite=False)                                      (Gui.saveProjectAs:988)               (Gui.echoCommands:526)
WARNING: Layout is not the correct format, converting to a dict                                                                              (Layout._checkLayoutFormat:202)
INFO   : Saving V3.1 Layout                                                                                                                  (CcpnModuleArea.saveState:591)
INFO   : Project successfully saved to "/Users/mh653/ProfileByReferenceTutorial/Profile_By_Reference_Part_2.ccpn"                            (Gui.saveProjectAs:1123)
WARNING: /Users/mh653/ProfileByReferenceTutorial/Spectra/311/pdata/1/procs (line:10): Extraneous 'w##$ABSF1= 0'                              (BrukerSpectrumDataSource.read_jcamp:719)
WARNING: /Users/mh653/ProfileByReferenceTutorial/Spectra/311/pdata/1/procs (line:10): Extraneous 'w##$ABSF1= 0'                              (BrukerSpectrumDataSource.read_jcamp:719)
INFO   : get('SP:media_cell_S0_1').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S0_2').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S0_3').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S0_4').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S0_5').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S0_6').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cellFree_S0_1').getSliceData(position=None, sliceDim=1)                         (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cellFree_S0_2').getSliceData(position=None, sliceDim=1)                         (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cellFree_S0_3').getSliceData(position=None, sliceDim=1)                         (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
WARNING: /Users/mh653/ProfileByReferenceTutorial/Spectra/311/pdata/1/procs (line:10): Extraneous 'w##$ABSF1= 0'                              (BrukerSpectrumDataSource.read_jcamp:719)
INFO   : get('SP:media_cell_S3_1').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S3_2').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S3_3').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S3_4').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S3_5').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cell_S3_6').getSliceData(position=None, sliceDim=1)                             (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cellFree_S3_1').getSliceData(position=None, sliceDim=1)                         (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cellFree_S3_2').getSliceData(position=None, sliceDim=1)                         (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : get('SP:media_cellFree_S3_3').getSliceData(position=None, sliceDim=1)                         (Spectrum.getSliceData:2646)          (Gui.echoCommands:526)
INFO   : application.saveProject()                                                                     (Gui.saveProject:1128)                (Gui.echoCommands:526)
INFO   : Validating Project integrity...                                                                                                     (Project._getAPIObjectsStatus:2339)
INFO   : Saving V3.1 Layout                                                                                                                  (CcpnModuleArea.saveState:591)
