{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,30]],"date-time":"2026-04-30T16:34:55Z","timestamp":1777566895035,"version":"3.51.4"},"reference-count":28,"publisher":"The Open Journal","issue":"55","license":[{"start":{"date-parts":[[2020,11,4]],"date-time":"2020-11-04T00:00:00Z","timestamp":1604448000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2020,11,4]],"date-time":"2020-11-04T00:00:00Z","timestamp":1604448000000},"content-version":"am","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"},{"start":{"date-parts":[[2020,11,4]],"date-time":"2020-11-04T00:00:00Z","timestamp":1604448000000},"content-version":"tdm","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["JOSS"],"published-print":{"date-parts":[[2020,11,4]]},"DOI":"10.21105\/joss.02705","type":"journal-article","created":{"date-parts":[[2020,11,4]],"date-time":"2020-11-04T21:35:21Z","timestamp":1604525721000},"page":"2705","source":"Crossref","is-referenced-by-count":37,"title":["DeepReg: a deep learning toolkit for medical image registration"],"prefix":"10.21105","volume":"5","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1184-7421","authenticated-orcid":false,"given":"Yunguan","family":"Fu","sequence":"first","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5685-971X","authenticated-orcid":false,"given":"Nina","family":"Brown","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5004-0663","authenticated-orcid":false,"given":"Shaheer","family":"Saeed","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0539-3638","authenticated-orcid":false,"given":"Adri\u00e0","family":"Casamitjana","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6838-335X","authenticated-orcid":false,"given":"Zachary","family":"Baum","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0398-4995","authenticated-orcid":false,"given":"R\u00e9mi","family":"Delaunay","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4401-5311","authenticated-orcid":false,"given":"Qianye","family":"Yang","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2608-2580","authenticated-orcid":false,"given":"Alexander","family":"Grimwood","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8903-1561","authenticated-orcid":false,"given":"Zhe","family":"Min","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7150-9918","authenticated-orcid":false,"given":"Stefano","family":"Blumberg","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7569-173X","authenticated-orcid":false,"given":"Juan","family":"Iglesias","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2916-655X","authenticated-orcid":false,"given":"Dean","family":"Barratt","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9217-5438","authenticated-orcid":false,"given":"Ester","family":"Bonmati","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2439-350X","authenticated-orcid":false,"given":"Daniel","family":"Alexander","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5565-1252","authenticated-orcid":false,"given":"Matthew","family":"Clarkson","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1794-0456","authenticated-orcid":false,"given":"Tom","family":"Vercauteren","sequence":"additional","affiliation":[]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4902-0486","authenticated-orcid":false,"given":"Yipeng","family":"Hu","sequence":"additional","affiliation":[]}],"member":"8722","reference":[{"key":"ref1","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-32245-8_45"},{"key":"ref2","doi-asserted-by":"publisher","DOI":"10.1016\/j.media.2018.07.002"},{"key":"ref3","doi-asserted-by":"publisher","DOI":"10.1109\/ISBI.2018.8363756"},{"key":"ref4","doi-asserted-by":"publisher","DOI":"10.1016\/j.media.2018.11.010"},{"key":"ref5","doi-asserted-by":"publisher","DOI":"10.1109\/TMI.2019.2897538"},{"key":"ref6","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-59716-0_24"},{"key":"ref7","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmpb.2018.01.025"},{"key":"ref8","doi-asserted-by":"publisher","DOI":"10.1109\/CVPR.2016.90"},{"key":"ref9","unstructured":"Very deep convolutional networks for large-scale image recognition, Simonyan, Karen and Zisserman, Andrew, arXiv preprint arXiv:1409.1556, 2014"},{"key":"ref10","doi-asserted-by":"publisher","DOI":"10.1016\/j.neuroimage.2007.07.007"},{"key":"ref11","doi-asserted-by":"publisher","DOI":"10.1016\/j.neuroimage.2008.10.040"},{"key":"ref12","unstructured":"Introduction to Medical Image Registration with DeepReg, between Old and New, Montana Brown, Nina and Fu, Yunguan and Saeed, Shaheer U. and Casamitjana, Adri\u00e0 and Baum, Zachary M. C. and Delaunay, R\u00e9mi and Yang, Qianye and Grimwood, Alexander and Min, Zhe and Bonmati, Ester and Vercauteren, Tom and Clarkson, Matthew J. and Hu, Yipeng, https:\/\/github.com\/DeepRegNet\/DeepReg\/blob\/main\/docs\/Intro_to_Medical_Image_Registration.ipynb, 2020"},{"key":"ref13","unstructured":"Cardiac segmentation on late gadolinium enhancement mri: A benchmark study from multi-sequence cardiac mr segmentation challenge, Zhuang, Xiahai and Xu, Jiahang and Luo, Xinzhe and Chen, Chen and Ouyang, Cheng and Rueckert, Daniel and Campello, Victor M and Lekadir, Karim and Vesal, Sulaiman and RaviKumar, Nishant and others, arXiv preprint arXiv:2006.12434, 2020"},{"key":"ref14","doi-asserted-by":"publisher","DOI":"10.1088\/0031-9155\/46\/3\/201"},{"key":"ref15","doi-asserted-by":"publisher","DOI":"10.1007\/s00138-020-01066-5"},{"key":"ref16","doi-asserted-by":"publisher","DOI":"10.1088\/1361-6560\/ab843e"},{"key":"ref17","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-030-59716-0_15"},{"key":"ref18","unstructured":"Learning conditional deformable templates with convolutional networks, Dalca, Adrian and Rakic, Marianne and Guttag, John and Sabuncu, Mert, Advances in neural information processing systems, 806\u2013818, 2019"},{"key":"ref19","doi-asserted-by":"publisher","DOI":"10.1007\/978-3-658-29267-6_53"},{"key":"ref20","doi-asserted-by":"publisher","DOI":"10.1109\/42.796284"},{"key":"ref21","doi-asserted-by":"publisher","DOI":"10.5281\/zenodo.3835682"},{"key":"ref22","doi-asserted-by":"publisher","DOI":"10.1002\/mp.12268"},{"key":"ref23","doi-asserted-by":"publisher","DOI":"10.5281\/zenodo.3715652"},{"key":"ref24","unstructured":"A large annotated medical image dataset for the development and evaluation of segmentation algorithms, Simpson, Amber L and Antonelli, Michela and Bakas, Spyridon and Bilello, Michel and Farahani, Keyvan and Van Ginneken, Bram and Kopp-Schneider, Annette and Landman, Bennett A and Litjens, Geert and Menze, Bjoern and others, arXiv preprint arXiv:1902.09063, 2019"},{"key":"ref25","doi-asserted-by":"publisher","DOI":"10.1016\/j.cmpb.2009.09.002"},{"key":"ref26","doi-asserted-by":"publisher","DOI":"10.1109\/CVPRW.2016.78"},{"key":"ref27","unstructured":"AirLab: autograd image registration laboratory, Sandk\u00fchler, Robin and Jud, Christoph and Andermatt, Simon and Cattin, Philippe C, arXiv preprint arXiv:1806.09907, 2018"},{"key":"ref28","unstructured":"TensorFlow: Large-Scale Machine Learning on Heterogeneous Systems, https:\/\/www.tensorflow.org\/, Software available from tensorflow.org, Mart\u0131\u0301n\u00a0Abadi and Ashish\u00a0Agarwal and Paul\u00a0Barham and Eugene\u00a0Brevdo and Zhifeng\u00a0Chen and Craig\u00a0Citro and Greg\u00a0S.\u00a0Corrado and Andy\u00a0Davis and Jeffrey\u00a0Dean and Matthieu\u00a0Devin and Sanjay\u00a0Ghemawat and Ian\u00a0Goodfellow and Andrew\u00a0Harp and Geoffrey\u00a0Irving and Michael\u00a0Isard and Jia, Yangqing and Rafal\u00a0Jozefowicz and Lukasz\u00a0Kaiser and Manjunath\u00a0Kudlur and Josh\u00a0Levenberg and Dandelion\u00a0Man\u00e9 and Rajat\u00a0Monga and Sherry\u00a0Moore and Derek\u00a0Murray and Chris\u00a0Olah and Mike\u00a0Schuster and Jonathon\u00a0Shlens and Benoit\u00a0Steiner and Ilya\u00a0Sutskever and Kunal\u00a0Talwar and Paul\u00a0Tucker and Vincent\u00a0Vanhoucke and Vijay\u00a0Vasudevan and Fernanda\u00a0Vi\u00e9gas and Oriol\u00a0Vinyals and Pete\u00a0Warden and Martin\u00a0Wattenberg and Martin\u00a0Wicke and Yuan\u00a0Yu and Xiaoqiang\u00a0Zheng, 2015"}],"container-title":["Journal of Open Source Software"],"original-title":[],"link":[{"URL":"https:\/\/joss.theoj.org\/papers\/10.21105\/joss.02705.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2020,11,4]],"date-time":"2020-11-04T21:35:30Z","timestamp":1604525730000},"score":1,"resource":{"primary":{"URL":"https:\/\/joss.theoj.org\/papers\/10.21105\/joss.02705"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,11,4]]},"references-count":28,"journal-issue":{"issue":"55","published-online":{"date-parts":[[2020,11]]}},"alternative-id":["10.21105\/joss.02705"],"URL":"https:\/\/doi.org\/10.21105\/joss.02705","relation":{"has-review":[{"id-type":"uri","id":"https:\/\/github.com\/openjournals\/joss-reviews\/issues\/2705","asserted-by":"subject"}],"references":[{"id-type":"doi","id":"10.5281\/zenodo.4210215\u201d","asserted-by":"subject"}]},"ISSN":["2475-9066"],"issn-type":[{"value":"2475-9066","type":"electronic"}],"subject":[],"published":{"date-parts":[[2020,11,4]]}}}