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This algorithm is widely used in medical image segmentation because it produces complete division even under poor contrast. However, over\u2010segmentation is its most significant limitation. Therefore, this article proposes a combination of watershed transformation and the expectation\u2010maximization (EM) algorithm to segment MR brain images efficiently. The EM algorithm is used to form clusters. Then, the brightest cluster is considered and converted into a binary image. A Sobel operator applied on the binary image generates the initial gradient image. Morphological reconstruction is applied to find the foreground and background markers. The final gradient image is obtained using the minima imposition technique on the initial gradient magnitude along with markers. In addition, watershed segmentation applied on the final gradient magnitude generates effective gray matter and cerebrospinal fluid segmentation. The results are compared with simple marker controlled watershed segmentation, watershed segmentation combined with Otsu multilevel thresholding, and local binary fitting energy model for validation. \u00a9 2016 Wiley Periodicals, Inc. 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