Install tomosipo¶

A minimal installation requires:

python >= 3.6
ASTRA-toolbox >= 2.0
CUDA

Installation using anaconda¶

The requirements can be installed using the anaconda package manager. The following snippet creates a new conda environment named tomosipo (replace X.X by your CUDA version)

conda create -n tomosipo cudatoolkit=<X.X> tomosipo -c defaults -c astra-toolbox -c aahendriksen

Install the latest development branch¶

To install the latest development branch from GitHub, first create a new environment named tomosipo containing the required packages:

conda create -n tomosipo python=3.8 astra-toolbox cudatoolkit=X.X -c astra-toolbox

Then activate the environment and install tomosipo using pip:

source activate tomosipo
pip install git+https://github.com/ahendriksen/tomosipo@develop

Install optional dependencies¶

To use tomosipo with PyTorch, QT, ODL, and cupy, install:

conda create -n tomosipo tomosipo cudatoolkit=<X.X> pytorch cupy pyqtgraph pyqt pyopengl cupy \
             -c defaults -c astra-toolbox -c pytorch -c conda-forge -c aahendriksen
source activate tomosipo
# Install latest version of ODL:
pip install git+https://github.com/odlgroup/odl

Install with pytorch¶

To just install PyTorch, use

conda create -n tomosipo pytorch cudatoolkit=<X.X> tomosipo -c defaults -c astra-toolbox -c aahendriksen -c pytorch